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Ref. ID Author Title Journal Year Vol. Pages Keyword Strains
4003   Koei Hamana, Takemitsu Furuchi, Hedenori Hayashi, Masaru Niitsu   Additional polyamine analysis of algal chlorarachniophytes, euglenophytes, haptophytes, cryptophytes, dinoflagellates, chromoerids and heterokontophytes –Polyamine analysis of algae IV–   Mirob. Resour. Sys.     Mirob. Resour. Sys. 511–62     KU-1372  
4002   Mikami K, Ito M, Taya K, Kishimoto I, Kobayashi T, Itabashi Y, Tanaka R.   Parthenosporophytes of the brown alga Ectocarpus siliculosus exhibit sex-dependent differences in thermotolerance as well as fatty acid and sterol composition.   Mar Environ Res   2018   Mar Environ Res 188-195     KU-1371 KU-1372  
4001   Akita S., Koiwai K., Hanyuda T., Kato S., Nozaki R., Uchino T., Sakamoto T., Kondo H., Hirono I. Fujita D.   Development of 11 Ecklonia radicosa (Phaeophyceae, Laminariales) SSRs marker using next-generation sequencing and intra-genus amplification analysis   J. Appl. Phycol.   2018   J. Appl. Phycol.     KU-1116 KU-1134  
4000   Salome Buglass, Hiroshi Kawai, Takeaki Hanyuda, Euan Harvey, Simon Donner, Julio De la Rosa, Inti Keith, Jorge Rafael Bermúdez, María Altamirano   Novel mesophotic kelp forests in the Galápagos archipelago   Marine Biology   2022   Marine Biology     KU-1125 KU-1134 KU-1277
 
3999   Hanyuda T, Hansen GI, Kawai H.   Genetic identification of macroalgal species on Japanese tsunami marine debris and genetic comparisons with their wild populations.   Mar Pollut Bull   2018   Mar Pollut Bull 74-81     KU-1104 KU-1109 KU-1173
KU-1328 KU-1332 KU-1333
KU-1334 KU-1335 KU-1336
KU-1341 KU-1354 KU-1361
KU-1372 KU-1373 KU-1392
KU-1394 KU-1401 KU-1402
KU-1405 KU-1406 KU-1408
KU-1428 KU-1444  
3998   Kawai H, Hanyuda T, Gao X, Terauchi M, Miyata M, Lindstrom SC, Klochkova NG, Miller KA.   Taxonomic revision of the Agaraceae with a description of Neoagarum gen. nov. and reinstatement of Thalassiophyllum.   J Phycol   2017   J Phycol 261-270     KU-0150 KU-0206 KU-0503
KU-0508 KU-0679 KU-0798
KU-0799 KU-1134 KU-1165
KU-1271 KU-1277  
3997   Hiroshi Kawai, Takeaki Hanyuda, Eric C. Henry   Transfer of Pilinia from Ectocarpales to Ishigeales (Phaeophyceae) with proposal of Piliniaceae fam. nov., and taxonomy of Porterinema in Ectocarpales   European Journal of Phycology   2021   European Journal of Phycology 1-10     KU-1070 KU-1118 KU-1141
KU-1152 KU-1158 KU-1170
KU-1171 KU-1176 KU-1179
KU-1228 KU-1265 KU-1302
KU-1307 KU-1459  
3996   Coale, T. H., Loconte, V., Turk-Kubo, K. A., Vanslembrouck, B., Mak, W. K. E., Cheung, S., Ekman, A., Chen, J.-H., Hagino, K., Takano, Y., Nishimura, T., Adachi, M., Le Gros, M., Larabell, C., Zehr, J. P.   Nitrogen-fixing organelle in a marine alga.   Science,   2024   384,     NIES-4399  
3995   Zheng, S., Lee, V., Meza-Padilla, I., Nissimov, J. I.   Antiviral discovery in toxic cyanobacteria: Low hanging fruit in the age of pandemics.   J. Phycol.,   2024   ,   antiviral activity; cyanobacteria; Microcystis aeruginosa; ssRNA viruses; ssDNA viruses   NIES-298  
3994   Ohnuki, S., Sato, N., Fujiwara, S.   Investigation of the cause of the sensitivity difference to pyrazosulfuron-ethyl between the green algae, Raphidocelis subcapitata and Desmodesmus subspicatus, focusing on target-site and nontarget-site resistance.   Jpn. J. Environ. Toxicol.,   2024   27, 9-22.   Raphidocelis subcapitata; Desmodesmus subspicatus; sensitivity; sulfonylurea herbicide; cytochrome P450   NIES-4282  
3993   Ueno, Y. & Akimoto, S.   Long-term light adaptation of light-harvesting and energy-transfer processes in the glaucophyte Cyanophora paradoxa under different light conditions.   Photosynth. Res.,   2024   159, 165-175.   Excitation energy transfer; Light harvesting; Glaucophyte; Light adaptation; Time-resolved fuorescence spectroscopy   NIES-547  
3992   Ramírez‑Romero, A., Da Costa Magalhães, B., Matricon, L., Sassi, J.-F., Steyer, J.-P., Delrue, F.   Aqueous phase recycling: impact on microalgal lipid accumulation and biomass quality.   Environ. Sci. Pollut. Res.,   2024   ,   Renewable feedstock; Hydrothermal liquefaction; Green fuels; Microalgal biomass; Nutrient cycling   NIES-2173 NIES-227  
3991   Feng, S., Liu, F., Zhu, S., Xu, Z., Qin, L., Feng, P., Wang, Z., Chen, H., Guo, W., Ngo, H. H.   Role of hydraulic retention time in integration of microalgae and activated sludge process for nutrient recycle from diluted dairy liquid digestate.   Chem. Eng. J.,   2024   484, 49538 (article ID).   Microalgae and activated sludge; Hydraulic retention time; Dairy liquid digestate; Biomass production; Pollutant removal; Metagenomic analysis   NIES-227  
3990   Horikoshi, S., Hidaka, T., Nishimura, F., Kishimoto, N.   Development of separation and recovery technology of cultured Euglena gracilis using activated sludge for anaerobic digestion.   Bioresour. Technol. Reports,   2024   25, 101790 (article ID).   Methane fermentation; Sewage treatment plant; Waste activated sludge   NIES-49  
3989   Nakanishi, A., Omino, N., Nakamura, T., Goto, S., Matsumoto, R., Yomogita, M., Narisawa, N., Kimijima, M., Iritani, K.   Evaluation of cellular responses of heterotrophic Escherichia coli cultured with autotrophic Chlamydomonas reinhardtii as a nutrient source by analyses based on microbiology and transcriptome.   Microorganisms,   2024   12, 452 (article ID).   Escherichia coli; Chlamydomonas reinhardtii; cellular response; transcriptomics   NIES-2235  
3988   Kasai, Y., Takagi, S., Ota, S., Ishii, K., Takeshita, T., Kawano, S., Harayama, S.   Development of a CRISPR/Cas9-mediated gene-editing method to isolate a mutant of the unicellular green alga Parachlorella kessleri strain NIES-2152 with improved lipid productivity.   Biotechnol. Biofuels Bioprod.,   2024   17, (article ID).   Parachlorella kessleri; Genetic transformationElectroporation; Genome editing; CRISPR/Cas9   NIES-2152  
3987   Zhang, K., Wan, M., Bai, W., Bao, Z., Duan, X., Wang, W., Fan, F., Li, Y.   A novel heterotrophic cultivation process of Euglena gracilis based on NaCl stress significantly increases the paramylon production.   Algal Res.,   2024   78, 103391 (article ID).     NIES-48  
3986   Tsai, K.-P., Kirschman, Z. A., Moldaenke, C., Chaffin, J. D., McClure, A., Seo, Y., Bridgeman, T. B.   Field and laboratory studies of fluorescence-based technologies for real-time tracking of cyanobacterial cell lysis and potential microcystins release.   Sci. Total Environ.,   2024   920, 171121 (article ID).   Cyanobacterial bloom; Cell lysis; Extracellular microcystin; Unbound phycocyanin; Early warning system; Drinking water treatment   NIES-298  
3985   Kato, K., Hamaguchi, T., Kumazawa, M., Nakajima, Y., Ifuku, K., Hirooka, S., Hirose, Y., Miyagishima, S., Suzuki, T., Kawakami, K., Dohmae, N., Yonekura, K., Shen, J.-R., Nagao, R.   The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs.   Proc. Natl. Acad. Sci. U. S. A.,   2024   121, e2319658121 (article ID).   light-harvesting complex; photosynthesis; photosystem; red alga   NIES-2137  
3984   Wang, K., Li, w., Cui, H., Qin, S.   Phylogenetic analysis and characterization of diguanylate cyclase and phosphodiesterase in planktonic filamentous cyanobacterium Arthrospira sp..   Int. J. Mol. Sci.,   2023   24, 15210 (article ID).   c-di-GMP; Arthrospira; diguanylate cyclase; phosphodiesterase; riboswitch   NIES-39  
3983   Shiraishi, H., Sasase, M., Nakashima, A. S.   Helicoid morphology of Arthrospira platensis NIES-39 confers temperature compensation in the longitudinal movement velocity of its trichomes.   Phycology,   2024   4, 104-116.   Arthrospira platensis; cell movement; cyanobacteria; gliding motility; helix; multicellularity; spirulina; temperature compensation   NIES-39  
3982   Glass, S. E., McCourt, R. M., Gottschalk, S. D., Lewis, L. A., Karol, K. G.   Chloroplast genome evolution and phylogeny of the early-diverging charophycean green algae with a focus on the Klebsormidiophyceae and Streptofilum.   J. Phycol.,   2023   59, 1133-1146.   algae; Charophyta; cryptic species; Entransia; green algae; Hormidiella; Interfilum; Klebsormidium; Streptosarcina; systematics   NIES-477  
3981   Takusagawa, M., Misumi, O., Nozaki, H., Kato, S., Maruyama, S., Tsujimoto-Inui, Y., Yagisawa, F., Ohnuma, M., Kuroiwa, H, Kuroiwa, T., Matsunaga, S.   Complete mitochondrial and chloroplast DNA sequences of the freshwater green microalga Medakamo hakoo.   Genes Genet. Syst.,   2024   98, 353-360.   mitochondria; chloroplast; organelle genome; Trebouxiophyceae   NIES-4000  
3980   Carrillo-Carrasco, V. P., Hernandez-Garcia, J., Weijers, D.   Electroporation-based delivery of proteins in Peniummargaritaceum and other zygnematophycean algae.   Physiol. Plant.,   2023   175, e1412 (article ID).     NIES-217 NIES-67  
3979   Hirooka, S., Hirose, Y., Kanesaki, Y., Higuchi, S., Fujiwara, T., Onuma, R., Era, A., Ohbayashi, R., Uzuka, A., Nozaki, H., Yoshikawa, H., Miyagishima, SY.   Acidophilic green algal genome provides insights into adaptation to an acidic environment.   Proc. Natl. Acad. Sci. U. S. A.,   2017   114, E8304–E8313.   acidic environment; acidophilic alga; comparative genomics; comparative transcriptomics; environmental adaptation   NIES-2499  
3978   Nagi, G. K., Goel, M., Tiwari, R., Bhawna, Gaur, S., Mallick, N., Mandal, S.   Simultaneous production of bio-crude bio-oil via hydrothermal liquefaction and carotenoids via supercritical extraction from Nannochloropsis oceanica and recycling effluent to establish circular processes.   J. Clean Prod.,   2023   428, 13945 (article ID).   Algal biofuels; Biorefinery; Circular bioeconomy; Hydrothermal liquefaction; Microalgae; Nannochloropsis oceanica   NIES-2145  
3977   Kurtović, K., Schmidt, V., Nehasilová, M., Vosolsobĕ, S., Petrášek, J.   Rediscovering Chara as a model organism for molecular and evo‑devo studies.   Protoplasma,   2023   261, 183-196.   Chara; Plant evolution; Model plants; Charophytesas   NIES-1604  
3976   Wijesinghe, A., Senevirathna, M. D. H. J., Fujino, T.   Egeria densa organic extracts: an eco-friendly approach to suppress Microcystis aeruginosa growth through allelopathy.   Water Sci. Technol.,   2023   88, 2955–2973.   allelopathy; cyanobacteria; growth inhibition; macrophytes; plant extracts   NIES-111  
3975   Hosoda, K., Seno, S., MurakamiN., Matsuda, H., Osada, Y., Kamiura, R., Kondoh, M.   Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach.   Biosystems,   2024   235, 105087 (article ID).   Synthetic ecosystem; Experimental model ecosystem; Microbial microcosm; Machine learning   NIES-21 NIES-2236 NIES-227
NIES-35  
3974   Kodama, Y. & Endoh, Y.   Comparative analyses of the symbiotic associations of the host Paramecium bursaria with free-living and native symbiotic species of Chlorella.   Curr. Microbiol.,   2024   81, 66 (article ID).     NIES-2169  
3973   Karitani, Y., Yamada, R., MatsumotoT., Ogino, H.   UV mutagenesis improves growth potential of green algae in a green algae–yeast co‑culture system.   Arch. Microbiol.,   2024   206, 61 (article ID).   Chlamydomonas reinhardtii; Co-cultivation; Photosynthesis; Saccharomyces cerevisiae; Mutagenesis; Transcriptome analysis   NIES-2238  
3972   Nagasoe, S., Suzuki, K., Yurimoto, T., Fuseya, R., Fukao, T., Yamatogi, T., Kimoto, K., Maeno, Y.   Clearance effects of the Pacific oyster Crassostrea gigas on the fish-killing algae Chattonella marina and Chattonella antiqua.   Aquat. Biol.,   2011   11, 201-211.   Clearance rate; Raphidophyte; Harmful algae; Chattonella spp.   NIES-2659 NIES-2660  
3971   Maruyama, K. & Ohtsuki, T.   A simple method for the preparation of single cells and regeneration of colonies of Botryococcus braunii NIES836.   J. Microbiol. Methods,   2024   216, 106859 (article ID).   Botryococcus braunii; Colony regeneration; Microalgae; Nutrient limitation; Single-cell preparation   NIES-836  
3970   Shen, X. F., Xu, Y. P., Tong, X. Q., Huang, Q., Zhang, S., Gong, J., Chu, F. F., Zeng, R. J.   The mechanism of carbon source utilization by microalgae when co-cultivated with photosynthetic bacteria.   Bioresour. Technol.,   2022   365, 28152 (article ID).   Microalgae; Photosynthetic bacteria; FAME; iTRAQ; Carbon mechanism   NIES-2168 NIES-227 NIES-2280
 
3969   Shen, X. F., Xu, Y. P., Jiang, Y. F., Gao, L. J., Tong, X. Q., Gong, J., Yang, Y. F., Zeng, R. J.   Evaluating nutrient limitation in co-culture of Chlorella pyrenoidosa and Rhodobacter sphaeroides.   Sci. Total Environ.,   2024   906, 167706 (article ID).   Microalgae; Photosynthetic bacteria; FAME; iTRAQ; Nitrogen starvation   NIES-2168  
3968   Magalhães, B. D., Matricon, L., Romero, L. A. R., Checa, R., Lorentz, C., Chambonniere, P., Delrue, F., Roubaud, A., Afanasiev, P., Laurenti, D., Geantet, C.   Catalytic hydrotreatment of bio-oil from continuous HTL of Chlorella sorokiniana and Chlorella vulgaris microalgae for biofuel production.   Biomass Bioenerg.,   2023   173, 106798 (article ID).     NIES-227 NIES-2273  
3967   Kumari, S., Kumar, V., Kothari, R., Kumar, P.   Experimental and optimization studies on phycoremediation of dairy wastewater and biomass production efficiency of Chlorella vulgaris isolated from Ganga River, Haridwar, India.   Environ. Sci. Pollut. Res.,   2022   29, 74643–74654.   Bioremediation; Environmental restoration; Freshwater algae; Industrial pollution; Response surface methodology; Wastewater treatment   NIES-227  
3966   Kumar, S., Kumar, R., Diksha, Kumari, A., Panwar, A.   Astaxanthin: A super antioxidant from microalgae and its therapeutic potential   J. Basic Microbiol.,   2022   62, 1064-1082.   biological activities; cultivation system, biorefining proces   NIES-144  
3965   Nakanishi, A., Nemoto, S., Yamamoto, N., Iritani, K., Watanabe, M.   Identification of cell-attachment factors derived from green algal cells disrupted by sonication in fabrication of cell plastics.   Bioengineering-Basel,   2023   10, 893 (article ID).   cell plastics; unicellular green algae; attachment factors in matrices; proteomics   NIES-2235  
3964   Handa, S., Nakahara-Tsubota, M., Shoda, I., Mizobuchi, A., Nakano, T., Tsubota, H.   Trentepohlia brevicellulis comb. et stat. nov. (Trentepohliaceae, Ulvophyceae) found in Japan.   Phycol. Res.,   2023   72, 12-26.   18S rDNA; aerial algae; molecular phylogeny; morphology; Trentepohlia bosseae var. brevicellulis   NIES-2644 NIES-2645 NIES-2646
NIES-2647 NIES-2649 NIES-2650
NIES-2651 NIES-2652 NIES-2653
NIES-2654 NIES-2655 NIES-2656
NIES-2657 NIES-2658  
3963   Yamagishi, S., Yamamoto, K., Takahashi, K., Kawai-Toyooka, H., Suzuki, S., Matsuzaki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H.   Evolutionary analysis of MID homologs during the transition from homothallic species to heterothallic species in Volvox sect. Volvox (Chlorophyceae).   Phycol. Res.,   2023   72, 46-55.   male gamete; mating system; minus dominance gene (MID); molecular evolution; sex; sperm packet; volvocine green algae   NIES-1362 NIES-1363 NIES-1708
NIES-1710 NIES-1859 NIES-2457
NIES-2569 NIES-2735 NIES-2736
NIES-2740 NIES-289 NIES-3382
NIES-3383 NIES-3780 NIES-3782
NIES-3786 NIES-3874 NIES-3984
NIES-3986 NIES-3988 NIES-4021
NIES-4025 NIES-4336 NIES-4432
NIES-4535 NIES-4536 NIES-4537
NIES-456 NIES-460 NIES-541
NIES-544 NIES-545 NIES-569
NIES-572 NIES-574 NIES-582
NIES-652 NIES-653 NIES-654
NIES-732 NIES-851 NIES-852
NIES-857 NIES-872 NIES-891
NIES-892  
3962   Seger, M., Mammadova, F., Villegas-Valencia, M., de Freitas, B. B., Chang, C. R. S., Isachsen, I., Hemstreet, H., Abualsaud, F., Boring, M., Lammers, P. J., Lauersen, K. J.   Engineered ketocarotenoid biosynthesis in the polyextremophilic red microalga Cyanidioschyzon merolae 10D.   Metab. Eng. Commun.,   2023   17, e00226 (article ID).   Microalgae; red algae; ketocarotenoids; Cyanidiophyceae; polyextremophiles; astaxanthin   NIES-3377  
3961   Martin, R. M., Denney, M. K., Pound, H. L., Chaffin, J. D., Bullerjahn, G. S., McKay, R. M. L., Zastepa, A., Jones, K. A., Castro, H. F., Campagna, S. R., Wilhelm, S. W.   Sulfolipid substitution ratios of Microcystis aeruginosa and planktonic communities as an indicator of phosphorus limitation in Lake Erie.   Limnol. Oceanogr.,   2023   68, 1117-1131.     NIES-843  
3960   Tuji, A., Ogiso-Tanaka, E., Yamaguchi, H.   Complete genome sequence of Annamia dubia, filamentous colony-making Chroococcales with the analysis of FraC gene influencing filament integrity.   J. Genomics,   2024   12,     NIES-4383  
3959   Yang, H. E., Yu, B. S., Sim, S. J.   Enhanced astaxanthin production of Haematococcus pluvialis strains induced salt and high light resistance with gamma irradiation.   Bioresour. Technol.,   2023   372, 128651 (article ID).   Haematococcus pluvialis NIES-144  
3958   Kim, J.-H., Park, B. S., Kim, J. H.   Comprehensive understanding of the life history of harmful raphidophyte Heterosigma akashiwo: Integrating in situ and in vitro observations.   Harmful Algae,   2023   129, 102521 (article ID).   Heterosigma akashiwo; Harmful alga; Raphidophyceae; Life history; Life cycle; Sexual reproduction; Hologamete; Homothallism; Zygote (large cell); Multiple cells; Cell cluster; Cyst cluster   NIES-293 NIES-5  
3957   Yamasaki, Y., Kameo, S., Wada, Y., Kitatsuji, S., Yuasa, K., Shikata, T.   Toxicological risk assessment of harmful algal species using the rotifer exposure test.   Bull. Plankton Soc. Japan,   2023   70, 52-61 (in Japanese with English summary).   Brachionus plicatilis; Dinophyceae; harmful algal bloom species; lethal effect on rotifers; Raphidophyceae   NIES-1 NIES-324  
3956   Sung, Y. J., Joun, J., Yu, B. S., Sim, S. J.   Chapter 10 - Photobioreactor systems for production of astaxanthin from microalgae.   In Current Developments in Biotechnology and Bioengineering. Photobioreactors : Design and Applications, Sirohi, R., Pandey, A., Sim, S., Chang, J.-S., Lee, D.-J., Elsevier   2023   pp. 229-246.     NIES-144  
3955   Zzzbe   Chapter 2 - Specialized metabolites from cyanobacteria and their biological activities.   In The Pharmacological Potential of Cyanobacteria, Eds. by Lopes, G., Silva, M., Vasconcelos, V., Academic press   2022   pp. 21-54.   Kumla, D., Sousa, M. E., Vasconcelos, V., Kijjoa, A.   NIES-88  
3954   Xia, Y., Kishi, M., Sugai, Y., Toda, T.   Microalgal flocculation and sedimentation: spatiotemporal evaluation of the effects of the pH and calcium concentration.   Bioprocess. Biosyst. Eng.,   2022   45, 1489-1498.   Keywords; Harvesting; Sedimentation efficiency; Sedimentation rate; Calcium recovery   NIES-227