|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
J Bacteriol. 1993;175(16):5009-21.
Identification and transcriptional analysis of the Escherichia coli htrE operon which is homologous to pap and related pilin operons.
Raina S, Missiakas D, Baird L, Kumar S, Georgopoulos C.
(
8102362
)
|
|
|
Deletion
|
ppdel-6
(LD)
,
OCR32
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yadV
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yadV
Search strains by all related name:
yadV b0140 ECK0139 ecpD JW0136
|
General information (Go to Linear View: )
|
|
Gene Name
|
yadV
|
|
Alternative name
|
b0140,ECK0139,ecpD,JW0136
|
|
Location, Length
|
155,461 - 156,201
(
-
)
;
3.35
min
;
741
(bp) ,
246
(aa)
|
|
Product
|
putative periplasmic pilin chaperone
|
|
Operon Name
|
ecpD-htrE
|
|
Note
|
probable pilin chaperone similar to PapD; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006457 - protein folding
|
|
Function
|
putative factor; Surface structures
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( ecpD )
GO:0006950
;
response to stress ( ecpD )
GO:0007047
;
cell wall organization and biogenesis ( ecpD )
GO:0009289
;
fimbrium ( ecpD )
GO:0030288
;
outer membrane-bounded periplasmic space ( ecpD )
GO:0042597
;
periplasmic space ( ecpD )
GO:0042995
;
cell projection ( ecpD )
|
|
PID
|
1786333
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
ECPD_ECOLI
(
P33128
)
|
|
- Protein name
|
Chaperone protein ecpD precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ecpD; OrderedLocusNames=b0140;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ecpD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of The Periplasmic Chaperone Sfae
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Chaperone protein ecpD precursor
|
|
PSI-BLAST
|
Chaperone protein ecpD precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted periplasmic pilin chaperone [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
MICROBODIES_CTER
PILI_CHAPERONE
|
|
MMBR References
|
J Bacteriol. 1993;175:5009-5021
Identification and transcriptional analysis of the Escherichia coli htrE operon which is homologous to pap and related pilin operons.
Raina, S., D. Missiakas, L. Baird, S. Kumar, and C. Georgopoulos.
|
| Sequences |
Amino acid
FASTA format
|
0001 MFFNTKHTTA LCFVTCMAFS SSSIADIVIS GTRVIYKSDQ KSVNVRLENK GNNPLLVQSW LDTGDDNAEP
0071 GSITVPFTAT PPVSRIDAKR GQTIKLMYTA STSLPKDRES VFWFNVLEVP PKPDAEKVAN QSLLQLAFRT
0141 RIKLFYRPDG LKGNPSEAPL ALKWFWSGSE GKASLRVTNP TPYYVSFSSG DLEASGKRYP IDVKMIAPFS
0211 DEVMKVNGLN GKANSAKVHF YAINDFGGAI EGNARL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 taagtattca ccagttaaat tgattgaatg
-070 aatatacagg gaataataat ttctatttta tattattccc tgttttaatt aactctatca gggatggttt
0001 atgtttttta acaccaaaca tacaacagct ttatgcttcg taacctgtat ggcttttagt tcatcgtcta
0071 ttgcggacat tgtcatttcg ggtactcgcg taatatataa aagcgatcaa aaaagtgtca acgtacgtct
0141 ggaaaataaa gggaataacc cgttgcttgt ccagagttgg ttagatactg gcgatgacaa cgctgagcct
0211 ggcagtatta cagtcccttt tactgctacg ccgccagtat cgcgtattga tgccaaacgt gggcaaacaa
0281 tcaaattaat gtacacagcc agcacctcac tgcctaaaga cagagagagc gtgttctggt ttaacgtact
0351 ggaagttcca ccaaaaccag atgcagaaaa ggtcgcgaat caaagcctgc tgcaactggc atttcgcaca
0421 cgtataaaac ttttctatcg cccggatgga ttgaagggaa atccctctga agccccgtta gccctgaagt
0491 ggttctggtc aggttcagaa ggtaaggcgt cattacgagt gaccaatcca accccttact acgtctcttt
0561 tagcagtggt gatttagaag ctagcggtaa acgctatccg attgatgtga aaatgattgc accatttagt
0631 gatgaggtca tgaaagtcaa tggccttaat ggcaaagcga attctgcaaa agtgcatttt tacgccatta
0701 atgactttgg tggcgcaatt gaaggtaatg ccaggctgta atcaggcaag gatataattc cgcaggaagc
0771 atagcgtgac tatagaatat actaaaaatt atcatcatct gacccgtatc gccacgtttt gcgcgctgct
0841 g
|
