|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
quuQ
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
quuQ
Search strains by all related name:
quuQ b1559 ECK1553 f260 JW1551 ydfT
|
General information (Go to Linear View: )
|
|
Gene Name
|
quuQ
|
|
Alternative name
|
b1559,ECK1553,f260,JW1551,ydfT
|
|
Location, Length
|
1,640,513 - 1,641,265
(
-
)
;
35.36
min
;
753
(bp) ,
250
(aa)
|
|
Product
|
Qin prophage; predicted antitermination protein Q
|
|
Operon Name
|
ydfUT
|
|
Note
|
|
|
Function
|
Phage or Prophage Related
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( ydfT )
GO:0006350
;
transcription ( ydfT )
GO:0006355
;
regulation of transcription, DNA-dependent ( ydfT )
GO:0006457
;
protein folding ( ydfT )
GO:0031072
;
heat shock protein binding ( ydfT )
GO:0031564
;
transcription antitermination ( ydfT )
GO:0051082
;
unfolded protein binding ( ydfT )
|
|
PID
|
87081935
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
REQ2_ECOLI
(
P76161
;
P77604
)
|
|
- Protein name
|
Antitermination protein Q homolog from lambdoid prophage Qin.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ydfT; OrderedLocusNames=b1559;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ydfT
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Antitermination protein Q homolog from lambdoid prophage Qin
|
|
PSI-BLAST
|
Chaperone protein dnaJ
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b1559 - Escherichia coli
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
GLYCOSAMINOGLYCAN
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
CYTOCHROME_C
|
| Sequences |
Amino acid
FASTA format
|
0001 MNLEALPKYY SPKSPKLSDD APATGTGCLT ITDVMAAQGM VQSKAPLGLA LFLAKVGVQD PQFAIEGLLN
0071 YAMALDNPTL NKLSEEIRLQ IIPYLVSFAF ADYSRSAASK ARCEHCSGTG FYNVLREVVK HYRRGESVIK
0141 EEWVKELCQH CHGKGEASTA CRGCKGKGIV LDEKRTRFHG VPVYKICGRC NGNRFSRLPT TLARRHVQKL
0211 VPDLTDYQWY KGYADVIGKL VTKCWQEEAY AEAQLRKVTR
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gtggcatttg aagataagta tggctcccaa
-070 ctggagctga tatttcgttt tatcgatcgc gcgctggcaa ttggcgtact ggcgtaagtg gagaacgagc
0001 atgaaccttg aagccttacc aaaatattac tccccaaaat ctccaaaatt gagcgatgac gctccagcga
0071 caggcaccgg ttgtttaaca attacggatg taatggcagc gcaggggatg gtgcagtcga aagcaccact
0141 tgggttggcc ttatttctgg caaaagttgg tgttcaggac cctcagtttg cgattgaagg cctgctaaat
0211 tacgcgatgg cactggataa cccgacattg aacaaattga gtgaagaaat ccggttacag attattcctt
0281 acctcgtgag ttttgccttt gctgattact ccaggtctgc ggcaagtaag gctcgctgtg agcattgttc
0351 aggtacggga ttttataatg tattgcgcga agtggtgaaa cactacagac gcggggaatc tgtaatcaag
0421 gaagaatggg tgaaggaact atgtcagcat tgccatggta agggcgaagc cagcacagcg tgcagagggt
0491 gtaagggtaa agggattgtt ctggatgaaa aaagaacccg gtttcatggc gtaccggtat ataagatttg
0561 tgggcgttgt aatggaaacc ggtttagtcg tttaccgacc acgctggcac gacgtcatgt ccagaagctg
0631 gtaccagacc tgaccgatta tcagtggtat aaggggtatg cggacgtcat tggtaaactg gtaacaaagt
0701 gctggcagga agaagcatac gcggaagcgc aattgaggaa ggtgacgaga taaatgattt ttgctgaaga
0771 tggcgacatg atgtttgcat ttttcaaaaa atatggataa aattttttca acgatgggct ttgtataccc
0841 gacgttaaga aaa
|
