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PEC Original Annotations
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|
Essentiality
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Class
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non-essential
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References (PMID)
|
|
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Deletion
|
OCR33,35-4 (AK4-2 / BK5-2)
(D)
,
OCR33-16
(D)
,
OCR33-9
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
cdaR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
cdaR
Search strains by all related name:
cdaR b0162 ECK0161 JW5013 sdaR yaeG
|
General information (Go to Linear View: )
|
|
Gene Name
|
cdaR
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|
Alternative name
|
b0162,ECK0161,JW5013,sdaR,yaeG
|
|
Location, Length
|
182,463 - 183,620
(
+
)
;
3.93
min
;
1158
(bp) ,
385
(aa)
|
|
Product
|
DNA-binding transcriptional regulator for gar and gud operons; carbohydrate diacid regulator
|
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Operon Name
|
cdaR
|
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Note
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Function
|
|
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Gene Ontology
|
GO:0006350
;
transcription ( cdaR )
GO:0006355
;
regulation of transcription, DNA-dependent ( cdaR )
|
|
PID
|
87081694
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
CDAR_ECOLI
(
P37047
)
|
|
- Protein name
|
Carbohydrate diacid regulator
|
|
- Synonyms
|
Sugar diacid regulator
|
|
- Gene name
|
Name=cdaR; Synonyms=sdaR; OrderedLocusNames=b0162;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
cdaR
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Carbohydrate diacid regulator
|
|
PSI-BLAST
|
Carbohydrate diacid regulator
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
DNA-binding transcriptional regulator [Escherichia coli W3110]
|
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
|
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PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
RGD
|
| Sequences |
Amino acid
FASTA format
|
0001 MAGWHLDTKM AQDIVARTMR IIDTNINVMD ARGRIIGSGD RERIGELHEG ALLVLSQGRV VDIDDAVARH
0071 LHGVRQGINL PLRLEGEIVG VIGLTGEPEN LRKYGELVCM TAEMMLEQSR LMHLLAQDSR LREELVMNLI
0141 QAEENTPALT EWAQRLGIDL NQPRVVAIVE VDSGQLGVDS AMAELQQLQN ALTTPERNNL VAIVSLTEMV
0211 VLKPALNSFG RWDAEDHRKR VEQLITRMKE YGQLRFRVSL GNYFTGPGSI ARSYRTAKTT MVVGKQRMPE
0281 SRCYFYQDLM LPVLLDSLRG DWQANELARP LARLKTMDNN GLLRRTLAAW FRHNVQPLAT SKALFIHRNT
0351 LEYRLNRISE LTGLDLGNFD DRLLLYVALQ LDEER
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CTTCACCACA ACTCCATACA TCTTCATCAT
-070 CCTTTAGGCA TTTGCACAAT GCCGTACGTT ACGTACTTCC TTATGCTAAG CCGTGCATAA CGGAGGACTT
0001 atggctggct ggcatcttga taccaaaatg gcgcaggata tcgtggcacg taccatgcgc atcatcgata
0071 ccaatatcaa cgtaatggat gcccgtgggc gaattatcgg cagcggcgat cgtgagcgta ttggtgaatt
0141 gcacgaaggt gcattgctgg tactttcaca gggacgagtc gtcgatatcg atgacgcggt agcacgtcat
0211 ctgcacggtg tgcggcaggg gattaatcta ccgttacggc tggaaggtga aattgtcggc gtaattggcc
0281 tgacaggtga accagagaat ctgcgtaaat atggcgaact ggtctgcatg acggctgaaa tgatgctgga
0351 acagtcgcgg ttgatgcact tgttggcgca ggatagccgt ttgcgggaag aactggtgat gaacctgatt
0421 caggcagagg agaatactcc cgcacttact gaatgggcgc aacggctggg gatcgatctc aatcaaccgc
0491 gagtggtggc tattgttgag gtcgacagcg gtcagcttgg cgtggacagc gcaatggcgg agttacaaca
0561 actgcaaaac gcgctgacta cgcccgagcg taataatctg gtggcgattg tctcgctaac cgaaatggtg
0631 gtgttgaaac cggcgttgaa ctcttttggg cgctgggatg cagaagatca tcgtaagcga gttgaacaac
0701 tgattacccg catgaaagag tacggccagc tgcgttttcg cgtttcactg ggcaactatt ttaccggtcc
0771 tggcagtatt gcccgatcct atcgtacggc gaaaacgacg atggtggtgg gtaaacagcg gatgccagaa
0841 agtcgctgct atttttatca ggatctgatg ttacctgtgt tactcgacag tttgcgtggc gactggcagg
0911 ccaacgaact ggcgcgaccg ctggcgcggc tgaaaacgat ggacaataac ggcttgctgc gacgaacgct
0981 ggcggcgtgg tttcgccaca atgtgcaacc gctggcaacg tcaaaggcgt tgtttattca tcgtaatacc
1051 ctggagtatc ggcttaatcg tatatcggaa ctgaccgggc ttgatttggg caattttgat gacaggttgc
1121 tgctgtatgt ggcgttacaa ctggatgaag agcggtagGT TATGCGTTAA GGTTGAGGCG GCGCTGGCTC
1191 ATTCCCCTCA GCCCGAAGGG TAGAGGGGAA TGCCCGAATT AACCGTCAGT TCGGGATTAT TTACGCGT
|
