|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
LD3-5-1
(LD)
,
OCL78
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
sdiA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
sdiA
Search strains by all related name:
sdiA b1916 ECK1915 JW1901 uvrX
|
General information (Go to Linear View: )
|
|
Gene Name
|
sdiA
|
|
Alternative name
|
b1916,ECK1915,JW1901,uvrX
|
|
Location, Length
|
1,994,134 - 1,994,856
(
-
)
;
42.98
min
;
723
(bp) ,
240
(aa)
|
|
Product
|
quorum-sensing transcriptional activator
|
|
Operon Name
|
sdiA
|
|
Note
|
transcriptional regulator of ftsQAZ gene cluster; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016563 - transcription activator activity; GO_process: GO:0006350 - transcription
|
|
Function
|
regulator; Cell division
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( sdiA )
GO:0003700
;
transcription factor activity ( sdiA )
GO:0005622
;
intracellular ( sdiA )
GO:0006350
;
transcription ( sdiA )
GO:0006355
;
regulation of transcription, DNA-dependent ( sdiA )
GO:0007049
;
cell cycle ( sdiA )
GO:0043565
;
sequence-specific DNA binding ( sdiA )
GO:0051301
;
cell division ( sdiA )
|
|
PID
|
1788224
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
SDIA_ECOLI
(
P07026
;
P76313
)
|
|
- Protein name
|
Regulatory protein sdiA.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=sdiA; OrderedLocusNames=b1916;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
sdiA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Solution Structure Of E Coli Sdia1-171
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Regulatory protein sdiA
|
|
PSI-BLAST
|
Regulatory protein sdiA
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
DNA-binding transcriptional activator [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
HTH_LUXR_FAMILY
|
|
MMBR References
|
J Bacteriol. 1996;178:2742-2748
An extracellular factor regulates expression of sdiA, a transcriptional activator of cell division genes in Escherichia coli.
Garcia-Lara, J., L. H. Shang, and L. I. Rothfield.
|
EMBO J. 1991;10:3363-3372
A factor that positively regulates cell division by activating transcription of the major cluster of essential cell division genes of Escherichia coli.
Wang, X. D., P. A. de Boer, and L. I. Rothfield.
|
| Sequences |
Amino acid
FASTA format
|
0001 MQDKDFFSWR RTMLLRFQRM ETAEEVYHEI ELQAQQLEYD YYSLCVRHPV PFTRPKVAFY TNYPEAWVSY
0071 YQAKNFLAID PVLNPENFSQ GHLMWNDDLF SEAQPLWEAA RAHGLRRGVT QYLMLPNRAL GFLSFSRCSA
0141 REIPILSDEL QLKMQLLVRE SLMALMRLND EIVMTPEMNF SKREKEILRW TAEGKTSAEI AMILSISENT
0211 VNFHQKNMQK KINAPNKTQV ACYAAATGLI
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cattgcctga ataatataaa ttatatataa
-070 atcttattta tgtgatagtt tgaattatca ttataaatga tactcactct caggggcgtt gcggtttact
0001 atgcaggata aggatttttt cagctggcgt cgcacgatgc tgttgcgttt tcagaggatg gagaccgcag
0071 aagaggtcta ccatgaaatt gagcttcagg ctcagcagct ggagtacgat tactattcgt tatgtgtccg
0141 ccacccggta ccattcactc gacctaaagt ggctttttac accaattacc ctgaggcgtg ggttagttat
0211 tatcaggcaa aaaactttct cgcaattgat ccggtgctga accctgaaaa ctttagtcag ggccatttaa
0281 tgtggaatga tgacttattc agcgaagcac agccgttatg ggaagccgcg cgcgcacatg gtttacgccg
0351 cggtgtcact cagtatttaa tgctgccaaa ccgggcgctg ggctttttgt ccttttcccg ttgcagcgcg
0421 cgcgaaatac ccattcttag tgatgaactg caattaaaaa tgcagttact ggtgcgcgaa agtctgatgg
0491 ctctgatgcg tttaaatgat gaaatagtga tgacgccaga gatgaatttc agcaagcgcg aaaaagaaat
0561 tctgaggtgg acggcggaag ggaaaacatc agcagagata gcgatgattt tgtcaatctc tgagaatacg
0631 gtcaatttcc accagaaaaa catgcagaaa aaaattaatg caccaaataa gacccaggtt gcctgttacg
0701 cggccgctac tggcttaatt tgatctcttt tctgtcctgc gtgccagatg caaaaaccgg ctgaaaggca
0771 cgctatcagc cggttttata ttactgacgg taggcttgtt taatttgctt aac
|
