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PEC Original Annotations
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|
Essentiality
|
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Class
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non-essential
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References (PMID)
|
|
|
Deletion
|
OCR36
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yafC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yafC
Search strains by all related name:
yafC b0208 ECK0208 JW0198
|
General information (Go to Linear View: )
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Gene Name
|
yafC
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Alternative name
|
b0208,ECK0208,JW0198
|
|
Location, Length
|
229,967 - 230,881
(
-
)
;
4.96
min
;
915
(bp) ,
304
(aa)
|
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Product
|
putative DNA-binding transcriptional regulator
|
|
Operon Name
|
yafC
|
|
Note
|
putative transcriptional regulator LYSR-type; GO_function: GO:0016563 - transcription activator activity; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0006350 - transcription
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Function
|
putative transport; Not classified
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Gene Ontology
|
GO:0003677
;
DNA binding ( yafC )
GO:0003700
;
transcription factor activity ( yafC )
GO:0005515
;
protein binding ( yafC )
GO:0006350
;
transcription ( yafC )
GO:0006355
;
regulation of transcription, DNA-dependent ( yafC )
|
|
PID
|
1786401
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YAFC_ECOLI
(
P30864
)
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- Protein name
|
Putative HTH-type transcriptional regulator yafC.
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- Synonyms
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- Gene name
|
Name=yafC; OrderedLocusNames=b0208;
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| Sequences |
Amino acid
FASTA format
|
0001 MKATSEELAI FVSVVESGSF SRAAEQLGQA NSAVSRAVKK LEMKLGVSLL NRTTRQLSLT EEGERYFRRV
0071 QSILQEMAAA ESEIMETRNT PRGLLRIDAA TPVVLHFLMP LIKPFRERYP EVTLSLVSSE TIINLIERKV
0141 DVAIRAGTLT DSSLRARPLF NSYRKIIASP DYISRYGKPE TIDDLKQHIC LGFTEPASLN TWPIARSDGQ
0211 LHEVKYGLSS NSGETLKQLC LSGNGIACLS DYMIDKEIAR GELVELMADK VLPVEMPFSA VYYSDRAVST
0281 RIRAFIDFLS EHVKTAPGGA VREA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cattatggag aacattaaat cgcatgacat
-070 atcacgcatc ctgatggttt aatgacaaat aaattcaaaa tatctcttct attttgcaac aggagcaaaa
0001 atgaaagcca cgtcggaaga actcgccatt tttgtttcgg tcgtcgaaag cggcagcttt agccgggcag
0071 cggaacaatt agggcaagca aactcagcgg taagccgggc ggtgaaaaag ctggagatga aacttggcgt
0141 tagcctgctt aatcggacca cgcgacaact tagcctgacg gaagaaggcg agcgttattt tcgtcgcgta
0211 cagtcaattt tgcaggagat ggcagcggca gaatcagaaa ttatggagac gcgtaataca ccgcgtggac
0281 tgttacggat cgatgccgca actccagtgg tgctgcactt tctgatgccg ttaattaagc ctttccgtga
0351 acgctatccg gaagtcactt tgtcgctagt ctcctccgaa acgattatta atttgatcga aagaaaagtg
0421 gatgtcgcga tacgcgctgg tacgttaacg gattccagct tacgtgccag gccgttattt aacagttatc
0491 gaaaaattat cgcctccccc gattatattt cccgctacgg gaagccagaa acgatcgacg atttaaagca
0561 acatatttgc ctgggattca ctgaacccgc ttccctcaat acctggccga tagcccgtag cgatggacaa
0631 ttacatgagg tgaagtacgg tttgtcatcc aatagtgggg aaacactgaa acagctttgc ctgagtggca
0701 acgggattgc gtgtttgtcc gactacatga tcgacaaaga aatcgctcgc ggagaattgg tggagttaat
0771 ggcagataaa gtgttgccag tggaaatgcc attcagtgcc gtctattaca gcgaccgtgc ggtaagtacg
0841 cgcatccggg cttttatcga tttccttagc gagcatgtaa aaacagctcc cggaggagct gtcagagagg
0911 cttaatccca ttcaggagcc agaccttccg ggctaaccag gcggtcgttg caatccagtg cggcgatcgc
0981 ttttttatct tcggcatcaa gctgtaaatt ttgtg
|
