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PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
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|
References (PMID)
|
|
|
Deletion
|
OCR36
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yafS
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yafS
Search strains by all related name:
yafS b0213 ECK0213 JW0203 o246
|
General information (Go to Linear View: )
|
|
Gene Name
|
yafS
|
|
Alternative name
|
b0213,ECK0213,JW0203,o246
|
|
Location, Length
|
234,816 - 235,538
(
+
)
;
5.06
min
;
723
(bp) ,
240
(aa)
|
|
Product
|
putative S-adenosyl-L-methionine-dependent methyltransferase
|
|
Operon Name
|
yafS
|
|
Note
|
|
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Function
|
|
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Gene Ontology
|
GO:0008152
;
metabolic process ( yafS )
GO:0008168
;
methyltransferase activity ( yafS )
|
|
PID
|
87081700
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YAFS_ECOLI
(
P75672
;
P71281
)
|
|
- Protein name
|
Hypothetical protein yafS.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yafS; OrderedLocusNames=b0213;
|
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yafS
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Hypothetical Protein (Bh2331) From Bacillus Halodurans At 1.95 A Resolution
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yafS
|
|
PSI-BLAST
|
Hypothetical protein yafS
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli W3110]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MKPARVPQTV VAPDCWGDLP WGKLYRKALE RQLNPWFTKM YGFHLLKIGN LSAEINCEAC AVSHQVNVSA
0071 QGMPVQVQAD PLHLPFADKS VDVCLLAHTL PWCTDPHRLL READRVLIDD GWLVISGFNP ISFMGLRKLV
0141 PVLRKTSPYN SRMFTLMRQL DWLSLLNFEV LHASRFHVLP WNKHGGKLLN AHIPALGCLQ LIVARKRTIP
0211 LTLNPMKQSK NKPRIRQAVG ATRQCRKPQA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GACCTGCTTC ATCATTCAAA ACCCAGATGT
-070 AATTGTCATC AAAGGCGGGA ATACTGTTAA GATTCATAGA TTACCTCTCA GTGTGAAACG GAAGGTTGTG
0001 atgaaaccgg caagagtccc tcaaactgtc gtggctcctg attgctgggg cgatttgccc tggggaaagc
0071 tttatcgcaa ggcgctggag cgccagctca acccgtggtt cactaaaatg tatggttttc atctgcttaa
0141 gattggcaat ttaagcgcag aaatcaattg cgaagcgtgc gcggtttctc atcaagtgaa tgtttctgcg
0211 caaggaatgc ccgtccaggt acaggcggac ccacttcatc ttccttttgc cgataaatcc gttgatgttt
0281 gtctactggc acatacattg ccgtggtgca ccgatccgca tcgtttattg cgtgaagccg atcgggtatt
0351 gattgatgat ggctggctgg tcattagtgg cttcaatccc atcagtttta tgggattacg caaacttgtg
0421 ccggtattgc gcaaaacctc gccctataac agccggatgt ttactctgat gcggcagctg gactggctct
0491 ctttgttgaa ttttgaagtg ctacacgcca gccgtttcca cgttctcccg tggaacaaac acggaggaaa
0561 actattgaat gcgcatattc ctgcgcttgg ttgcttacaa cttattgttg cccggaaacg gactattcct
0631 ttaacgctaa atccgatgaa acagagtaaa aacaagccac gaattcgcca ggcggttgga gccacccggc
0701 aatgtcgtaa accacaggct taaACTTCAA CTTGGTAGCC TGTATCTTCC AGTGTGGGAT TCATCGCCGC
0771 GGCACGAGCC AGTTCATCAC AGCGTTCGTT TTCCGGGTGT CCGGCATGGC CTT
|
