|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Biochem J. 1998;334 (Pt 2):355-65.
Transcriptional control and essential roles of the Escherichia coli ccm gene products in formate-dependent nitrite reduction and cytochrome c synthesis.
Tanapongpipat S, Reid E, Cole JA, Crooke H.
(
9716493
)
|
|
|
Deletion
|
14
(LD)
,
OCL70,72-3 (LD 14B_CRS)
(D)
,
OCL70,72-4 (LD 14C_P/O)
(D)
,
OCL72
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
napC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
napC
Search strains by all related name:
napC b2202 ECK2194 JW2190 yejX
|
General information (Go to Linear View: )
|
|
Gene Name
|
napC
|
|
Alternative name
|
b2202,ECK2194,JW2190,yejX
|
|
Location, Length
|
2,295,679 - 2,296,281
(
-
)
;
49.48
min
;
603
(bp) ,
200
(aa)
|
|
Product
|
quinol dehydrogenase, electron source for NapAB
|
|
Operon Name
|
napFDAGHBC-ccmABCDEFGH
|
|
Note
|
cytochrome c-type protein; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0017004 - cytochrome complex assembly
|
|
Function
|
putative enzyme; Energy metabolism, carbon: Electron transport
|
|
Gene Ontology
|
GO:0005506
;
iron ion binding ( napC )
GO:0005886
;
plasma membrane ( napC )
GO:0006118
;
electron transport ( napC )
GO:0006810
;
transport ( napC )
GO:0016020
;
membrane ( napC )
GO:0016021
;
integral to membrane ( napC )
GO:0020037
;
heme binding ( napC )
GO:0046872
;
metal ion binding ( napC )
|
|
PID
|
1788530
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
NAPC_ECOLI
(
P33932
)
|
|
- Protein name
|
Cytochrome c-type protein napC.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=napC; OrderedLocusNames=b2202, c2739, z3459, ECs3091;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
napC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain C, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Cytochrome c-type protein napC
|
|
PSI-BLAST
|
Cytochrome c-type protein napC
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
cytochrome c-type protein [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
CYTOCHROME_C
|
|
MMBR References
|
Mol Microbiol. 1996;19(3):467-81.
Escherichia coli K-12 genes essential for the synthesis of c-type cytochromes and a third nitrate reductase located in the periplasm.
Grove J, Tanapongpipat S, Thomas G, Griffiths L, Crooke H, Cole J.
(
8830238
)
|
J Bacteriol. 1991;173(19):6139-46.
Anaerobically expressed Escherichia coli genes identified by operon fusion techniques.
Choe M, Reznikoff WS.
(
1917846
)
|
J Bacteriol. 1993;175:1165-1172
Identification of the regulatory sequence of anaerobically expressed locus aeg-46.5.
Choe, M., and W. S. Reznikoff.
|
| Sequences |
Amino acid
FASTA format
|
0001 MGNSDRKPGL IKRLWKWWRT PSRLALGTLL LIGFVGGIVF WGGFNTGMEK ANTEEFCISC HEMRNTVYQE
0071 YMDSVHYNNR SGVRATCPDC HVPHEFVPKM IRKLKASKEL YGKIFGVIDT PQKFEAHRLT MAQNEWRRMK
0141 DNNSQECRNC HNFEYMDTTA QKSVAAKMHD QAVKDGQTCI DCHKGIAHKL PDMREVEPGF
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ttatttctgt ctgcaatgtc acgtaccgca
-070 ggccgatacc gcgccaatcg tggggaatac ctttacccca tcaaaaggtt acgggaaata agaggttatt
0001 atgggaaatt ctgaccgtaa gcctggtctg attaagcgcc tgtggaaatg gtggcgtacc cccagccgtc
0071 tggcgctggg gacgctgctg ttgatcggtt ttgttggcgg catcgtcttc tggggtggct ttaacaccgg
0141 gatggaaaaa gccaataccg aagagttctg cattagctgc cacgaaatgc gcaacacggt gtatcaggaa
0211 tacatggatt ccgtgcacta caacaaccgt agcggcgtcc gtgcgacctg tccggattgt cacgttccgc
0281 acgagtttgt gccgaagatg atacgcaagc tcaaagcaag taaagagctg tatggtaaaa tttttggcgt
0351 tattgacacg ccgcagaaat ttgaagctca tcgtctgacg atggcacaga atgagtggcg gcgcatgaag
0421 gacaataact cgcaggagtg ccgtaactgt cacaacttcg agtatatgga tacaaccgcc cagaaatcgg
0491 ttgccgcgaa gatgcatgac caggcggtga aagatgggca aacctgtatt gattgccata aagggatagc
0561 gcacaagctg cccgatatgc gtgaagtcga gccaggtttt taacagggtt attgcgtggg tatgcttgaa
0631 gccagagagt tactttgtga gcgggatgaa cgaaccttat ttagtggctt gtcatttacg ctgaacgcag
0701 gag
|
