|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Biochem J. 1998;334 (Pt 2):355-65.
Transcriptional control and essential roles of the Escherichia coli ccm gene products in formate-dependent nitrite reduction and cytochrome c synthesis.
Tanapongpipat S, Reid E, Cole JA, Crooke H.
(
9716493
)
|
|
|
Deletion
|
14
(LD)
,
OCL70,72-3 (LD 14B_CRS)
(D)
,
OCL70,72-4 (LD 14C_P/O)
(D)
,
OCL72
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
napD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
napD
Search strains by all related name:
napD b2207 ECK2199 f87 JW2195 yojF
|
General information (Go to Linear View: )
|
|
Gene Name
|
napD
|
|
Alternative name
|
b2207,ECK2199,f87,JW2195,yojF
|
|
Location, Length
|
2,300,772 - 2,301,035
(
-
)
;
49.59
min
;
264
(bp) ,
87
(aa)
|
|
Product
|
assembly protein for periplasmic nitrate reductase
|
|
Operon Name
|
napFDAGHBC-ccmABCDEFGH
|
|
Note
|
GO_component: GO:0042597 - periplasmic space; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0006464 - protein modification process
|
|
Function
|
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( napD )
GO:0005737
;
cytoplasm ( napD )
|
|
PID
|
1788535
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
NAPD_ECOLI
(
P33938
)
|
|
- Protein name
|
NapD protein.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=napD; OrderedLocusNames=b2207, z3464, ECs3096, SF2291, S2421;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
napD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein napD
|
|
PSI-BLAST
|
Protein napD
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z3464 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
Mol Microbiol. 1996;19(3):467-81.
Escherichia coli K-12 genes essential for the synthesis of c-type cytochromes and a third nitrate reductase located in the periplasm.
Grove J, Tanapongpipat S, Thomas G, Griffiths L, Crooke H, Cole J.
(
8830238
)
|
J Bacteriol. 1991;173(19):6139-46.
Anaerobically expressed Escherichia coli genes identified by operon fusion techniques.
Choe M, Reznikoff WS.
(
1917846
)
|
J Bacteriol. 1993;175:1165-1172
Identification of the regulatory sequence of anaerobically expressed locus aeg-46.5.
Choe, M., and W. S. Reznikoff.
|
| Sequences |
Amino acid
FASTA format
|
0001 MHTNWQVCSL VVQAKSERIS DISTQLNAFP GCEVAVSDAP SGQLIVVVEA EDSETLIQTI ESVRNVEGVL
0071 AVSLVYHQQE EQGEETP
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tccgggatct accagccgca acttaatagc
-070 caactttgca acggatgtgg agcatgtgca gccagctgtc cggtatcagc cataactgcg gagtatctcc
0001 atgcacacta actggcaagt ttgcagcctg gtcgtgcagg ccaaaagcga acgaatttca gacatcagca
0071 cccaactgaa cgcctttccc ggctgtgaag ttgctgtcag cgacgcgccg agcggtcagt tgattgtggt
0141 ggtggaagca gaagacagcg aaacgctgat ccaaaccatt gagtcagtac gcaacgtaga gggcgtgctg
0211 gcggtgtcgc tggtttatca ccagcaggaa gagcaaggtg aggaaacacc atgaaactca gtcgtcgtag
0281 ctttatgaaa gctaacgccg ttgcggccgc tgcggcggct gccggtctca gcgtgccggg cgttgcccgc
0351 gccgttgttg gtca
|
