|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(lpcA-proB)70
,
OCR36,37-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yafN
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yafN
Search strains by all related name:
yafN b0232 ECK0233 JW0222
|
General information (Go to Linear View: )
|
|
Gene Name
|
yafN
|
|
Alternative name
|
b0232,ECK0233,JW0222
|
|
Location, Length
|
252,005 - 252,298
(
+
)
;
5.43
min
;
294
(bp) ,
97
(aa)
|
|
Product
|
antitoxin of the YafO-YafN toxin-antitoxin system
|
|
Operon Name
|
dinB-yafNOP
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( yafN )
|
|
PID
|
1786426
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YAFN_ECOLI
(
Q47156
)
|
|
- Protein name
|
Hypothetical protein yafN.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yafN; OrderedLocusNames=b0232;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yafN
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yafN
|
|
PSI-BLAST
|
Hypothetical protein yafN
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted antitoxin of the YafO-YafN toxin-antitoxin system [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
|
| Sequences |
Amino acid
FASTA format
|
0001 MHRILAEKSV NITELRKNPA KYFIDQPVAV LSNNRPAGYL LSASAFEALM DMLAEQEEKK PIKARFRPSA
0071 ARLEEITRRA EQYLNDMTDD DFNDFKE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GACGTTGCTT GACCCGCAAA TGGAAAGACA
-070 ACTGGTGCTG GGATTATGAT GTATACTATT ATGTATATTC TGGTGTGCAT TATTATGAGG GTATCACTGT
0001 atgcatcgaa ttctcgctga aaaatcggtc aatatcactg agttacgtaa aaacccagct aaatacttta
0071 ttgatcaacc ggttgcggtt ctttctaata atcgccccgc aggatatctc ttaagtgcca gcgcattcga
0141 agcgttaatg gacatgcttg ctgaacaaga ggagaaaaag cccataaagg cgcgcttccg tccaagtgct
0211 gcaagattag aggaaattac acgccgcgct gaacaatatc ttaatgatat gacggatgat gatttcaatg
0281 actttaagga ataaGGATGC GGGTATTCAA AACAAAACTT ATTCGCCTGC AACTTACAGC AGAGGAACTT
0351 GATGCGTTAA CGGCGGATTT TATTTCCTAT AAGCGTGACG GTGT
|
