|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
Gene. 1995;153(1):93-8.
Identification of a chromosomally encoded ABC-transport system with which the staphylococcal erythromycin exporter MsrA may interact.
Ross JI, Eady EA, Cove JH, Baumberg S.
(
7883194
)
|
|
|
Deletion
|
OCL51
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
bamE
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
bamE
Search strains by all related name:
bamE b2617 ECK2613 JW2598 smpA smqA
|
General information (Go to Linear View: )
|
|
Gene Name
|
bamE
|
|
Alternative name
|
b2617,ECK2613,JW2598,smpA,smqA
|
|
Location, Length
|
2,751,627 - 2,751,968
(
+
)
;
59.31
min
;
342
(bp) ,
113
(aa)
|
|
Product
|
lipoprotein component of BamABCDE OM biogenesis complex
|
|
Operon Name
|
smpA
|
|
Note
|
small membrane protein A; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
|
Function
|
|
|
Gene Ontology
|
GO:0009279
;
cell outer membrane ( smpA )
GO:0016020
;
membrane ( smpA )
GO:0019867
;
outer membrane ( smpA )
|
|
PID
|
87082138
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
SMPA_ECOLI
(
P23089
)
|
|
- Protein name
|
Small protein A precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=smpA; OrderedLocusNames=b2617, c3139, SF2676, S2854;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
smpA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Bacillus Stearothermophilus Alpha-Amylase
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Small protein A precursor
|
|
PSI-BLAST
|
Small protein A precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
Small protein A [Escherichia coli CFT073]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MRCKTLTAAA AVLLMLTAGC STLERVVYRP DINQGNYLTA NDVSKIRVGM TQQQVAYALG TPLMSDPFGT
0071 NTWFYVFRQQ PGHEGVTQQT LTLTFNSSGV LTNIDNKPAL SGN
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CCGGAAAGCA AAAGGTTTTA AAGTGATGAA
-070 AGGTCTATTA TCATCGGCAT ATTACAGATG AGCCACGTAC TGCTCGGGCC CGAAAAGGAA TCAAATCACT
0001 atgcgctgta aaacgctgac tgctgcagca gcagtactat tgatgttgac cgcaggctgt tccactctgg
0071 agcgagtggt ttaccgtcct gacatcaacc aggggaacta tctgaccgct aacgacgtat ccaaaatacg
0141 tgttggcatg acgcaacaac aagttgcgta cgcattgggt acaccgctga tgtccgatcc atttggtacg
0211 aatacctggt tctatgtctt ccgccagcaa ccaggtcatg aaggtgtaac tcagcaaacg ctgacgctga
0281 cctttaacag tagcggtgtg ttgaccaata ttgataacaa acctgcgctg agtggtaact aaTAATAAAG
0351 TTGCTCTCAA AGACGTTAAA AAAGGTGCTC AATGAGCACC TTTTTTCTGT CTGTTATTTA TTCGCTGATT
0421 TTTCTGCTCG TTGCCTGCGA AG
|
