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PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
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References (PMID)
|
|
|
Deletion
|
OCL51
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ratB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ratB
Search strains by all related name:
ratB b2618 ECK2614 f102 JW2599 pasI yfjF
|
General information (Go to Linear View: )
|
|
Gene Name
|
ratB
|
|
Alternative name
|
b2618,ECK2614,f102,JW2599,pasI,yfjF
|
|
Location, Length
|
2,752,030 - 2,752,320
(
-
)
;
59.32
min
;
291
(bp) ,
96
(aa)
|
|
Product
|
conserved protein, UPF0125 family
|
|
Operon Name
|
yfjGF
|
|
Note
|
|
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Function
|
|
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Gene Ontology
|
|
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PID
|
87082139
|
EC number
(KEGG Pathway)
|
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Homology Analysis
|
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BLAST
|
|
Bacteria
|
|
GTOP
|
yfjF
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of A 3d Domain-Swapped Dimer Of Hypothetical Protein From Haemophilus Influenzae
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
UPF0125 protein yfjF
|
|
PSI-BLAST
|
UPF0125 protein yfjF
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
COG2914: Uncharacterized protein conserved in bacteria [Shigella boydii BS512]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
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PROSITE
|
|
PROSITE
|
CAMP_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
|
| Sequences |
Amino acid
FASTA format
|
0001 MPGKIAVEVA YALPEKQYLQ RVTLQEGATV EEAIRASGLL ELRTDIDLTK NKVGIYSRPA KLSDSVHDGD
0071 RVEIYRPLIA DPKELRRQRA EKSANK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tttaccaata agttgattga actcgccttt
-070 ggtcgcgtgt ttaaagagct ggcggctaat atggtccagg cttttacggt tcgtgcgaaa gaggtttaca
0001 gtgccaggta aaattgccgt tgaggtggct tatgcgctac ctgagaagca gtacctgcag cgagtgacgc
0071 tgcaggaggg cgcgacggtt gaagaagcta ttcgcgccag tggcttgctg gaattgcgta ccgatatcga
0141 tttaactaaa aacaaagtcg gcatttacag ccgtccggca aaactaagcg atagtgtgca tgatggcgat
0211 cgggtggaga tttatcgccc tctcattgcc gatccgaaag agcttcgcag gcaacgagca gaaaaatcag
0281 cgaataaata acagacagaa aaaaggtgct cattgagcac cttttttaac gtctttgaga gcaactttat
0351 tattagttac cactcagcgc aggtttgtta tcaatattgg t
|
