|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL46
(D)
,
OCL46-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
casB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
casB
Search strains by all related name:
casB b2759 cse2 ECK2754 f160 JW2729 ygcK
|
General information (Go to Linear View: )
|
|
Gene Name
|
casB
|
|
Alternative name
|
b2759,cse2,ECK2754,f160,JW2729,ygcK
|
|
Location, Length
|
2,880,177 - 2,880,659
(
-
)
;
62.08
min
;
483
(bp) ,
160
(aa)
|
|
Product
|
CRISP RNA (crRNA) containing Cascade antiviral complex protein
|
|
Operon Name
|
casABCDE12
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
1789117
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YGCK_ECOLI
(
P76632
;
Q46900
)
|
|
- Protein name
|
Hypothetical protein ygcK.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygcK; OrderedLocusNames=b2759;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygcK
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygcK
|
|
PSI-BLAST
|
Hypothetical protein ygcK
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b2759 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MADEIDAMAL YRAWQQLDNG SCAQIRRVSE PDELRDIPAF YRLVQPFGWE NPRHQQALLR MVFCLSAGKN
0071 VIRHQDKKSE QTTGISLGRA LANSGRINER RIFQLIRADR TADMVQLRRL LTHAEPVLDW PLMARMLTWW
0141 GKRERQQLLE DFVLTTNKNA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ccctatgcac atcatcctaa attaataagc
-070 acattagcgc ttgcccgcgc cacgctatac aaacatttac gggagttaaa accgcaagga gggccatcaa
0001 atggctgatg aaattgatgc aatggcttta tatcgagcct ggcaacaact ggataatgga tcatgtgcgc
0071 aaattagacg tgtttcagaa cctgatgaat tacgcgatat ccctgcgttt tataggctgg tgcaaccttt
0141 tggttgggaa aacccacgtc accagcaggc tcttttgcgc atggtgtttt gcctgagcgc aggaaagaat
0211 gtcatccgac atcaggacaa aaaatcggag caaacaacag gtatctcgtt gggaagagct ttagccaata
0281 gtggaagaat taacgagcgc cgtatctttc aattaattcg ggctgacaga acagccgata tggtccagtt
0351 acgtcgatta cttactcacg ccgaacccgt acttgactgg ccattaatgg ccaggatgtt gacctggtgg
0421 ggaaagcgcg aacgccagca acttctggaa gattttgtat tgaccacaaa caaaaatgcg taaggaaacc
0491 tttctatgtc taactttatc aatattcatg ttctgatctc tcacagccct tcatgtctga accgcgacga
0561 tatgaacatg cagaaagacg cta
|
