|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL46
(D)
,
OCL46-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
casA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
casA
Search strains by all related name:
casA b2760 cse1 ECK2755 f502 JW2730 ygcL
|
General information (Go to Linear View: )
|
|
Gene Name
|
casA
|
|
Alternative name
|
b2760,cse1,ECK2755,f502,JW2730,ygcL
|
|
Location, Length
|
2,880,652 - 2,882,160
(
-
)
;
62.09
min
;
1509
(bp) ,
502
(aa)
|
|
Product
|
CRISP RNA (crRNA) containing Cascade antiviral complex protein
|
|
Operon Name
|
casABCDE12
|
|
Note
|
|
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Function
|
|
|
Gene Ontology
|
|
|
PID
|
1789118
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YGCL_ECOLI
(
Q46901
)
|
|
- Protein name
|
Hypothetical protein ygcL.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygcL; OrderedLocusNames=b2760;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygcL
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygcL
|
|
PSI-BLAST
|
Hypothetical protein ygcL
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b2760 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
CRYSTALLIN_BETAGAMMA
|
| Sequences |
Amino acid
FASTA format
|
0001 MNLLIDNWIP VRPRNGGKVQ IINLQSLYCS RDQWRLSLPR DDMELAALAL LVCIGQIIAP AKDDVEFRHR
0071 IMNPLTEDEF QQLIAPWIDM FYLNHAEHPF MQTKGVKAND VTPMEKLLAG VSGATNCAFV NQPGQGEALC
0141 GGCTAIALFN QANQAPGFGG GFKSGLRGGT PVTTFVRGID LRSTVLLNVL TLPRLQKQFP NESHTENQPT
0211 WIKPIKSNES IPASSIGFVR GLFWQPAHIE LCDPIGIGKC SCCGQESNLR YTGFLKEKFT FTVNGLWPHP
0281 HSPCLVTVKK GEVEEKFLAF TTSAPSWTQI SRVVVDKIIQ NENGNRVAAV VNQFRNIAPQ SPLELIMGGY
0351 RNNQASILER RHDVLMFNQG WQQYGNVINE IVTVGLGYKT ALRKALYTFA EGFKNKDFKG AGVSVHETAE
0421 RHFYRQSELL IPDVLANVNF SQADEVIADL RDKLHQLCEM LFNQSVAPYA HHPKLISTLA LARATLYKHL
0491 RELKPQGGPS NG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aattaattac gccgtatttt ttctttgttt
-070 ttaccgataa cggaagtgtg ccgacgtata gaaatgcagg agaaatgtcg gagcatatga aggagaacaa
0001 atgaatttgc ttattgataa ctggatccct gtacgcccgc gaaacggggg gaaagtccaa atcataaatc
0071 tgcaatcgct atactgcagt agagatcagt ggcgattaag tttgccccgt gacgatatgg aactggccgc
0141 tttagcactg ctggtttgca ttgggcaaat tatcgccccg gcaaaagatg acgttgaatt tcgacatcgc
0211 ataatgaatc cgctcactga agatgagttt caacaactca tcgcgccgtg gatagatatg ttctacctta
0281 atcacgcaga acatcccttt atgcagacca aaggtgtcaa agcaaatgat gtgactccaa tggaaaaact
0351 gttggctggg gtaagcggcg cgacgaattg tgcatttgtc aatcaaccgg ggcagggtga agcattatgt
0421 ggtggatgca ctgcgattgc gttattcaac caggcgaatc aggcaccagg ttttggtggt ggttttaaaa
0491 gcggtttacg tggaggaaca cctgtaacaa cgttcgtacg tgggatcgat cttcgttcaa cggtgttact
0561 caatgtcctc acattacctc gtcttcaaaa acaatttcct aatgaatcac atacggaaaa ccaacctacc
0631 tggattaaac ctatcaagtc caatgagtct atacctgctt cgtcaattgg gtttgtccgt ggtctattct
0701 ggcaaccagc gcatattgaa ttatgcgatc ccattgggat tggtaaatgt tcttgctgtg gacaggaaag
0771 caatttgcgt tataccggtt ttcttaagga aaaatttacc tttacagtta atgggctatg gccccatccg
0841 cattcccctt gtctggtaac agtcaagaaa ggggaggttg aggaaaaatt tcttgctttc accacctccg
0911 caccatcatg gacacaaatc agccgagttg tggtagataa gattattcaa aatgaaaatg gaaatcgcgt
0981 ggcggcggtt gtgaatcaat tcagaaatat tgcgccgcaa agtcctcttg aattgattat ggggggatat
1051 cgtaataatc aagcatctat tcttgaacgg cgtcatgatg tgttgatgtt taatcagggg tggcaacaat
1121 acggcaatgt gataaacgaa atagtgactg ttggtttggg atataaaaca gccttacgca aggcgttata
1191 tacctttgca gaagggttta aaaataaaga cttcaaaggg gccggagtct ctgttcatga gactgcagaa
1261 aggcatttct atcgacagag tgaattatta attcccgatg tactggcgaa tgttaatttt tcccaggctg
1331 atgaggtaat agctgattta cgagacaaac ttcatcaatt gtgtgaaatg ctatttaatc aatctgtagc
1401 tccctatgca catcatccta aattaataag cacattagcg cttgcccgcg ccacgctata caaacattta
1471 cgggagttaa aaccgcaagg agggccatca aatggctgat gaaattgatg caatggcttt atatcgagcc
1541 tggcaacaac tggataatgg atcatgtgcg caaattagac gtgtttcaga acctgatgaa ttacgcgat
|
