|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL38(-Km)
(LD)
,
OCL38
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rdgB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rdgB
Search strains by all related name:
rdgB b2954 ECK2949 JW2921 o197 yggV
|
General information (Go to Linear View: )
|
|
Gene Name
|
rdgB
|
|
Alternative name
|
b2954,ECK2949,JW2921,o197,yggV
|
|
Location, Length
|
3,094,703 - 3,095,296
(
+
)
;
66.70
min
;
594
(bp) ,
197
(aa)
|
|
Product
|
dITP/XTP pyrophosphatase
|
|
Operon Name
|
yggSTU-rdgB-yggW
|
|
Note
|
putative ribosomal protein
|
|
Function
|
putative structure; Not classified
|
|
Gene Ontology
|
GO:0000287
;
magnesium ion binding ( rdgB )
GO:0016151
;
nickel ion binding ( rdgB )
GO:0016787
;
hydrolase activity ( rdgB )
GO:0017111
;
nucleoside-triphosphatase activity ( rdgB )
GO:0030145
;
manganese ion binding ( rdgB )
|
|
PID
|
1789324
|
EC number
(KEGG Pathway)
|
3.6.1.-
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
HAM1_ECOLI
(
P52061
)
|
|
- Protein name
|
HAM1 protein homolog.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yggV; OrderedLocusNames=b2954;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yggV
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Putative Ribosomal Protein
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
HAM1 protein homolog
|
|
PSI-BLAST
|
HAM1 protein homolog
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
putative deoxyribonucleotide triphosphate pyrophosphatase [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
J Bacteriol. 1987;169(9):4203-10.
Escherichia coli K-12 mutants in which viability is dependent on recA function.
Clyman J, Cunningham RP.
(
2442140
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MQKVVLATGN VGKVRELASL LSDFGLDIVA QTDLGVDSAE ETGLTFIENA ILKARHAAKV TALPAIADDS
0071 GLAVDVLGGA PGIYSARYSG EDATDQKNLQ KLLETMKDVP DDQRQARFHC VLVYLRHAED PTPLVCHGSW
0141 PGVITREPAG TGGFGYDPIF FVPSEGKTAA ELTREEKSAI SHRGQALKLL LDALRNG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GTGATTGAAA AAGGCGAACT TGGCCGCCAC
-070 AAACAAATTA AAATCATTAA TCCGCAACAA ATCCCGCCAG AAATCGCGGC GTTAATTAAT TAGGTATCCT
0001 atgcaaaaag ttgtcctcgc aaccggcaat gtcggtaaag tgcgtgagct ggcgtcgctg cttagcgact
0071 tcggtcttga tatcgtggcc caaacagacc tcggcgttga ttccgctgaa gaaaccggcc tgacctttat
0141 cgaaaacgcg attctgaaag cgcgccatgc ggcaaaagtg accgctttac cggcaattgc cgacgactct
0211 ggtctggcgg tagatgtgct tggcggcgcg ccgggcattt actccgcgcg ttattccggt gaagacgcga
0281 ccgatcaaaa gaatctgcaa aaactgctgg aaacaatgaa agacgtaccg gacgaccaac gtcaggcgcg
0351 tttccactgc gtgctggtat atctgcgtca cgcggaagat cccactccgc tggtatgcca cggtagctgg
0421 ccgggcgtga ttactcgtga accagcgggc actggtggct ttggttatga tccaatcttc ttcgtacctt
0491 ccgaagggaa aaccgccgcc gaactgaccc gcgaagaaaa gagcgccatt tcccaccgtg gtcaggcgtt
0561 gaaactgctg ctggacgctt tacgtaatgg ttaaATTACC TCCGCTGAGT CTCTACATTC ACATCCCGTG
0631 GTGCGTGCAG AAATGCCCGT ACTGCGATTT CAACTCTCAC GCGTTGAAAG GAGAAGTGCC GCAC
|
