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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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|
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Deletion
|
OCL31
(D)
|
|
Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
agaD
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Related strains
|
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Strains Search
|
Search strains by gene name:
agaD
Search strains by all related name:
agaD b3140 ECK3128 JW3109 yraF
|
General information (Go to Linear View: )
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Gene Name
|
agaD
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Alternative name
|
b3140,ECK3128,JW3109,yraF
|
|
Location, Length
|
3,283,500 - 3,284,291
(
+
)
;
70.77
min
;
792
(bp) ,
263
(aa)
|
|
Product
|
N-acetylgalactosamine-specific enzyme IID component of PTS
|
|
Operon Name
|
agaS-kbaY-agaBCDI
|
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Note
|
PTS system, N-acetylglucosamine enzyme IID component 1; GO_process: GO:0046349 - amino sugar biosynthetic process
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Function
|
enzyme; Central intermediary metabolism: Amino sugars
|
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Gene Ontology
|
GO:0005351
;
sugar:hydrogen ion symporter activity ( agaD )
GO:0005886
;
plasma membrane ( agaD )
GO:0006810
;
transport ( agaD )
GO:0008643
;
carbohydrate transport ( agaD )
GO:0009401
;
phosphoenolpyruvate-dependent sugar phosphotransferase system ( agaD )
GO:0016020
;
membrane ( agaD )
GO:0016021
;
integral to membrane ( agaD )
|
|
PID
|
1789529
|
EC number
(KEGG Pathway)
|
2.7.1.69
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SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
PTPD_ECOLI
(
P42911
)
|
|
- Protein name
|
PTS system, N-acetylgalactosamine-specific IID component
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- Synonyms
|
EIID-Aga, N-acetylgalactosamine-permease IID component, Phosphotransferase enzyme II, D component
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- Gene name
|
Name=agaD; OrderedLocusNames=b3140;
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Homology Analysis
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BLAST
|
|
Bacteria
|
|
GTOP
|
agaD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
N-acetylgalactosamine permease IID component
|
|
PSI-BLAST
|
N-acetylgalactosamine permease IID component
|
|
nr
(database updated :
2007.02.20
)
|
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BLAST
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ORF_o290; Geneplot suggests frameshift linking to o267, not found [Escherichia coli]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
|
|
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PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MGSEISKKDI TRLGFRSSLL QASFNYERMQ AGGFTWAMLP ILKKIYKDDK PGLSAAMKDN LEFINTHPNL
0071 VGFLMGLLIS MEEKGENRDT IKGLKVALFG PIAGIGDAIF WFTLLPIMAG ICSSFASQGN LLGPILFFAV
0141 YLLIFFLRVG WTHVGYSVGV KAIDKVRENS QMIARSATIL GITVIGGLIA SYVHINVVTS FAIDNTHSVA
0211 LQQDFFDKVF PNILPMAYTL LMYYFLRVKK AHPVLLIGVT FVLSIVCSAF GIL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GGCGCAGGCT TTGCGGTGTA TGAGTTTTTC
-070 AATGCGAAAT CCCGGCAGCA AGCGCAACCG CAGCCCGTTG CCAGTAAAAA TGAAGAAGAG GACTACAGCA
0001 atgggatctg aaatcagtaa aaaagatatc acccgtctgg gctttcgttc gtcgctgctg caagcgagct
0071 ttaactacga aaggatgcag gcgggcggtt ttacctgggc gatgttgccg atcctgaaaa agatttataa
0141 ggacgacaaa ccgggcttaa gcgcggcgat gaaagataac ctcgaattta ttaataccca cccgaatctg
0211 gtcggattcc tgatggggtt attaatttcg atggaagaaa aaggagaaaa ccgcgacacc attaaaggcc
0281 tcaaagtggc actgtttggc ccaatcgccg ggattggcga tgcgattttc tggtttactt tgttgccgat
0351 tatggcggga atttgctcat catttgccag ccagggaaac ctgctggggc cgattctatt tttcgccgtt
0421 tacctgctta tctttttcct gcgcgtcggc tggacccacg tcggttattc agtcggcgtg aaggcgatcg
0491 ataaagtgcg agagaactcg cagatgattg cccgttcggc aaccatcctc gggatcacgg taatcggcgg
0561 gctgatcgct tcgtatgtgc atattaacgt ggtgacatcg tttgccatcg acaataccca cagcgttgcg
0631 ctgcagcagg atttcttcga taaagtcttc ccgaacattt taccgatggc ctacaccctg ctgatgtatt
0701 acttcctgcg ggtgaaaaaa gcgcatccgg tgctgttaat cggcgtgact tttgtgctct ctattgtttg
0771 ttccgcattc ggcattttgt aaATGGAACG AGGCACTGCG TCTGGTGGTG CCTCTTTACT TAAGGAATTT
0841 CATCCTGTGC AAACCCTTCA GCAAGTTGAA AACTATACGG CGTTAAGTGA AC
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