|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
2-1
(LD)
,
OCL10,16-3 (LD 2-1'_CRS)
(D)
,
OCL10,16-4 (LD 2-1'_P/O)
(D)
,
OCL15
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
hdeB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
hdeB
Search strains by all related name:
hdeB b3509 ECK3493 f112 JW5669 yhhD yhiC
|
General information (Go to Linear View: )
|
|
Gene Name
|
hdeB
|
|
Alternative name
|
b3509,ECK3493,f112,JW5669,yhhD,yhiC
|
|
Location, Length
|
3,653,989 - 3,654,315
(
-
)
;
78.76
min
;
327
(bp) ,
108
(aa)
|
|
Product
|
acid-resistance protein
|
|
Operon Name
|
hdeAB-yhiD
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
87082279
|
EC number
(KEGG Pathway)
|
|
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
|
EcoGene
|
hdeB
(
EG11399
)
|
|
Number of removed
|
29 aa cleaved
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
HDEB_ECOLI
(
P26605
)
|
|
- Protein name
|
Protein hdeB precursor
|
|
- Synonyms
|
10K-L protein
|
|
- Gene name
|
Name=hdeB; OrderedLocusNames=b3509, c4320, SF3543, S4224;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
hdeB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein hdeB precursor
|
|
PSI-BLAST
|
Protein hdeB precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
acid-resistance protein [Escherichia coli W3110]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
Mol Microbiol. 1994;13(6):1021-32.
Sigma S-dependent growth-phase induction of the csgBA promoter in Escherichia coli can be achieved in vivo by sigma 70 in the absence of the nucleoid-associated protein H-NS.
Arnqvist A, Olsen A, Normark S.
(
7854117
)
|
J Bacteriol. 1993;175(23):7747-8.
Physical map location of a set of Escherichia coli genes (hde) whose expression is affected by the nucleoid protein H-NS.
Yoshida T, Ueguchi C, Mizuno T.
(
8244952
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MNISSLRKAF IFMGAVAALS LVNAQSALAA NESAKDMTCQ EFIDLNPKAM TPVAWWMLHE ETVYKGGDTV
0071 TLNETDLTQI PKVIEYCKKN PQKNLYTFKN QASNDLPN
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 acatcgtact tccttgcata ttgaacaggc
-070 cggaatatct tctttaaaag cagctattcc tcctgttcat atataatctc tatattgaat gggttacaaa
0001 atgaatattt catctctccg taaagcgttt atttttatgg gcgctgtagc ggctttgtca ctggtgaacg
0071 cacaatctgc gttggcagcc aatgaatccg ctaaagatat gacctgccag gaatttattg atctgaatcc
0141 aaaagcaatg accccggttg catggtggat gctgcatgaa gaaacagtat ataaaggtgg cgataccgtt
0211 actttaaatg aaaccgatct cactcaaatt cctaaagtga tcgaatactg taagaaaaac ccgcagaaaa
0281 atttgtatac cttcaaaaat caagcatcta atgacttgcc gaattaatga ggtgcaagta aaaaggagta
0351 gcaagttgag ccatcttgct gctccttttt gcatttttat atgacagcag aatttattat acgtcttata
0421 ctcgcgg
|
