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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
|
J Biol Chem. 1999;274(20):14006-11.
A mutated PtsG, the glucose transporter, allows uptake of D-ribose.
Oh H, Park Y, Park C.
(
10318813
)
|
|
|
Deletion
|
OCR01-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rbsB
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Related strains
|
|
Strains Search
|
Search strains by gene name:
rbsB
Search strains by all related name:
rbsB b3751 ECK3745 JW3730 prlB rbsP rbsT
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General information (Go to Linear View: )
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Gene Name
|
rbsB
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Alternative name
|
b3751,ECK3745,JW3730,prlB,rbsP,rbsT
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|
Location, Length
|
3,934,301 - 3,935,191
(
+
)
;
84.80
min
;
891
(bp) ,
296
(aa)
|
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Product
|
D-ribose transporter subunit
|
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Operon Name
|
rbsDACBKR
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Note
|
D-ribose periplasmic binding protein; periplasmic-binding compoent of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0016052 - carbohydrate catabolic process
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Function
|
transport; Transport of small molecules: Carbohydrates, organic acids, alcohols
|
|
Gene Ontology
|
GO:0005351
;
sugar:hydrogen ion symporter activity ( rbsB )
GO:0006810
;
transport ( rbsB )
GO:0006935
;
chemotaxis ( rbsB )
GO:0008643
;
carbohydrate transport ( rbsB )
GO:0042597
;
periplasmic space ( rbsB )
|
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PID
|
1790192
|
EC number
(KEGG Pathway)
|
|
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Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
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EcoGene
|
rbsB
(
EG10815
)
|
|
Number of removed
|
25 aa cleaved
|
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SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
RBSB_ECOLI
(
P02925
)
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- Protein name
|
D-ribose-binding periplasmic protein precursor.
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- Synonyms
|
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- Gene name
|
Name=rbsB; Synonyms=rbsP, prlB; OrderedLocusNames=b3751;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
|
rbsB
(
homologous genes of other bacterias
)
|
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
Chain , D-Ribose-Binding Protein Complexed With Beta-D-Ribose
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
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BLAST
|
D-ribose-binding periplasmic protein precursor
|
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PSI-BLAST
|
HTH-type transcriptional repressor purR
|
|
nr
(database updated :
2007.02.20
)
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BLAST
|
D-ribose transporter subunit [Escherichia coli K12]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
|
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PROSITE
|
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PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
ATP_GTP_A
|
|
MMBR References
|
Cell. 1981;23(1):79-88.
Suppressor mutations that restore export of a protein with a defective signal sequence.
Emr SD, Hanley-Way S, Silhavy TJ.
(
7011570
)
|
J Bacteriol. 1984;158(2):674-82.
Molecular cloning and characterization of genes required for ribose transport and utilization in Escherichia coli K-12.
Iida A, Harayama S, Iino T, Hazelbauer GL.
(
6327617
)
|
J Bacteriol. 1984;158(2):665-73.
D-ribose metabolism in Escherichia coli K-12: genetics, regulation, and transport.
Lopilato JE, Garwin JL, Emr SD, Silhavy TJ, Beckwith JR.
(
6327616
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MNMKKLATLV SAVALSATVS ANAMAKDTIA LVVSTLNNPF FVSLKDGAQK EADKLGYNLV VLDSQNNPAK
0071 ELANVQDLTV RGTKILLINP TDSDAVGNAV KMANQANIPV ITLDRQATKG EVVSHIASDN VLGGKIAGDY
0141 IAKKAGEGAK VIELQGIAGT SAARERGEGF QQAVAAHKFN VLASQPADFD RIKGLNVMQN LLTAHPDVQA
0211 VFAQNDEMAL GALRALQTAG KSDVMVVGFD GTPDGEKAVN DGKLAATIAQ LPDQIGAKGV ETADKVLKGE
0281 KVQAKYPVDL KLVVKQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTCCTCCTAT TACCAGATGA TCGTCAAAGC
-070 GGTGGTGATT TTGCTGGCGG TGCTGGTAGA CAACAAAAAG CAGTAATAAC GACTACAGGA CATCTTGAAT
0001 atgaacatga aaaaactggc taccctggtt tccgctgttg cgctaagcgc caccgtcagt gcgaatgcga
0071 tggcaaaaga caccatcgcg ctggtggtct ccacgcttaa caacccgttc tttgtatcgc tgaaagatgg
0141 cgcgcagaaa gaggcggata aacttggcta taacctggtg gtgctggact cccagaacaa cccggcgaaa
0211 gagctggcga acgtgcagga cttaaccgtt cgcggcacaa aaattctgct gattaacccg accgactccg
0281 acgcagtggg taatgctgtg aagatggcta accaggcgaa catcccggtt atcactcttg accgccaggc
0351 aacgaaaggt gaagtggtga gccacattgc ttctgataac gtactgggcg gcaaaatcgc tggtgattac
0421 atcgcgaaga aagcgggtga aggtgccaaa gttatcgagc tgcaaggcat tgctggtaca tccgcagccc
0491 gtgaacgtgg cgaaggcttc cagcaggccg ttgctgctca caagtttaat gttcttgcca gccagccagc
0561 agattttgat cgcattaaag gtttgaacgt aatgcagaac ctgttgaccg ctcatccgga tgttcaggct
0631 gtattcgcgc agaatgatga aatggcgctg ggcgcgctgc gcgcactgca aactgccggt aaatcggatg
0701 tgatggtcgt cggatttgac ggtacaccgg atggcgaaaa agcggtgaat gatggcaaac tagcagcgac
0771 tatcgctcag ctacccgatc agattggcgc gaaaggcgtc gaaaccgcag ataaagtgct gaaaggcgag
0841 aaagttcagg ctaagtatcc ggttgatctg aaactggttg ttaagcagta gTTTTAATCA GGTTGTATGA
0911 CCTGATGGTG ACATAAATAC GTCATCGACA GATGAACGTG TAATATAAAG AAAAGCAGGG CACGCGCCAC
0981 CCTAACACGG T
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