|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR05
(D)
,
OCR05-12-1
(D)
,
OCR05-13
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rdoA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rdoA
Search strains by all related name:
rdoA b3859 ECK3851 JW3831 o328 orfA yihE
|
General information (Go to Linear View: )
|
|
Gene Name
|
rdoA
|
|
Alternative name
|
b3859,ECK3851,JW3831,o328,orfA,yihE
|
|
Location, Length
|
4,040,438 - 4,041,424
(
+
)
;
87.08
min
;
987
(bp) ,
328
(aa)
|
|
Product
|
Thr/Ser kinase implicated in Cpx stress response
|
|
Operon Name
|
rdoA-dsbA
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0005737
;
cytoplasm ( rdoA )
|
|
PID
|
1790290
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YIHE_ECOLI
(
P32127
)
|
|
- Protein name
|
Hypothetical protein yihE.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yihE; OrderedLocusNames=b3859, c4803;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yihE
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Hypothetical Protein Yihe From Escherichia Coli
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein rdoA
|
|
PSI-BLAST
|
Protein rdoA
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted kinase [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MNNSAFTFQT LHPDTIMDAL FEHGIRVDSG LTPLNSYENR VYQFQDEDRR RFVVKFYRPE RWTADQILEE
0071 HQFALQLVND EVPVAAPVAF NGQTLLNHQG FYFAVFPSVG GRQFEADNID QMEAVGRYLG RMHQTGRKQL
0141 FIHRPTIGLN EYLIEPRKLF EDATLIPSGL KAAFLKATDE LIAAVTAHWR EDFTVLRLHG DCHAGNILWR
0211 DGPMFVDLDD ARNGPAVQDL WMLLNGDKAE QRMQLETIIE AYEEFSEFDT AEIGLIEPLR AMRLVYYLAW
0281 LMRRWADPAF PKNFPWLTGE DYWLRQTATF IEQAKVLQEP PLQLTPMY
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCTCGCGGCG TAATTAAAGA GTAAAAGCTT
-070 GTAAGCGGCG CCACCAAAAT CATCGTGAAA TGATATCCTT CGTCATTCGT AATGTTTTCC GGATGATGGG
0001 atgaataaca gcgcttttac tttccagaca ctacacccgg ataccatcat ggacgctctg tttgagcatg
0071 ggatccgggt ggattccggt cttaccccgc ttaacagcta tgaaaaccgt gtctatcaat ttcaggacga
0141 agatcgtcga cgttttgtcg tcaaatttta tcgccctgaa cgttggacag ccgatcaaat cctcgaagaa
0211 catcaatttg cgttgcagct ggtaaatgat gaagttccgg tcgcagcacc tgtggccttt aacggtcaga
0281 ctttattgaa tcatcaggga ttttatttcg ctgtttttcc aagcgtcggt ggtcgccagt tcgaagctga
0351 taatatcgat cagatggaag cggttgggcg ttatttaggg cgtatgcacc agacggggcg caaacagctt
0421 tttatccatc gcccgaccat cggtttgaac gaatatctca ttgagccacg caagctgttt gaggacgcta
0491 cactgatacc ttccgggttg aaagcggcat tcctgaaagc gacagatgag ctgattgccg ccgttacagc
0561 acactggcgg gaagatttca ccgttctgcg gctacatgga gactgccacg ccgggaatat tctctggcgc
0631 gatggtccaa tgtttgttga tctggatgat gcacgtaatg gtccagccgt tcaggatttg tggatgttgc
0701 tcaatggcga taaagccgag cagcggatgc aactggaaac tattattgaa gcttatgaag aatttagcga
0771 gttcgacacc gctgaaatcg gactgattga acctttacgc gccatgcgtt tggtttatta tcttgcctgg
0841 ctaatgcggc gttgggctga tcccgcgttc ccgaaaaatt tcccgtggtt aaccggggaa gattactggc
0911 tgcgacagac ggcgactttt atagaacagg caaaagttct acaagaaccc cctttgcaat taacacctat
0981 gtattaaTCG GAGAGAGTAG ATCATGAAAA AGATTTGGCT GGCGCTGGCT GGTTTAGTTT TAGCGTTTAG
1051 CGCATCGGCG GCGCAGTATG AAGATGGTAA ACAGTAC
|
