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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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OCR07
(D)
,
DE(rhaD-tpiA)269
|
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Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
kdgT
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Related strains
|
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Strains Search
|
Search strains by gene name:
kdgT
Search strains by all related name:
kdgT b3909 ECK3902 JW5560
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General information (Go to Linear View: )
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Gene Name
|
kdgT
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Alternative name
|
b3909,ECK3902,JW5560
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Location, Length
|
4,099,713 - 4,100,696
(
+
)
;
88.36
min
;
984
(bp) ,
327
(aa)
|
|
Product
|
2-keto-3-deoxy-D-gluconate transporter
|
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Operon Name
|
kdgT
|
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Note
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2-keto-3-deoxy-D-gluconate transport system; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process
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Function
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transport; Transport of small molecules: Carbohydrates, organic acids, alcohols
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Gene Ontology
|
GO:0005351
;
sugar:hydrogen ion symporter activity ( kdgT )
GO:0005886
;
plasma membrane ( kdgT )
GO:0006810
;
transport ( kdgT )
GO:0008643
;
carbohydrate transport ( kdgT )
GO:0015293
;
symporter activity ( kdgT )
GO:0015649
;
2-keto-3-deoxygluconate:hydrogen symporter activity ( kdgT )
GO:0016020
;
membrane ( kdgT )
GO:0016021
;
integral to membrane ( kdgT )
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PID
|
87082349
|
EC number
(KEGG Pathway)
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|
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SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
KDGT_ECOLI
(
P32172
)
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- Protein name
|
2-keto-3-deoxygluconate permease
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- Synonyms
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KDG permease
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- Gene name
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Name=kdgT; OrderedLocusNames=b3909, c4861, SF3986, S3762;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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kdgT
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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2-keto-3-deoxygluconate permease (KDG permease)
|
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PSI-BLAST
|
2-keto-3-deoxygluconate permease (KDG permease)
|
|
nr
(database updated :
2007.02.20
)
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BLAST
|
2-keto-3-deoxygluconate permease [Escherichia coli CFT073]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
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MMBR References
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Proc R Soc Lond B Biol Sci. 1974;187(1087):121-31.
Genetical analysis of fructose utilization by Escherichia coli.
Jones-Mortimer MC, Kornberg HL.
(
4154035
)
|
J Bacteriol. 1984;160(2):600-6.
Construction and expression of hybrid plasmids containing the structural gene of the Escherichia coli K-12 3-deoxy-2-oxo-D-gluconate transport system.
Mandrand-Berthelot MA, Ritzenthaler P, Mata-Gilsinger M.
(
6094479
)
|
Nucleic Acids Res. 1993;21:3391-3398
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
Plunkett, G., V. D. Burland, D. L. Daniels, and F. R. Blattner.
|
Eur J Biochem. 1972;30(3):479-94.
[A common pathway for hexouronate degradation in Escherichia coli K 12. Induction mechanism of 2-keto-3-deoxy-gluconate metabolizing enzymes]
Pouyssegur JM, Stoeber FR.
(
4565407
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MQIKRSIEKI PGGMMLVPLF LGALCHTFSP GAGKYFGSFT NGMITGTVPI LAVWFFCMGA SIKLSATGTV
0071 LRKSGTLVVT KIAVAWVVAA IASRIIPEHG VEVGFFAGLS TLALVAAMDM TNGGLYASIM QQYGTKEEAG
0141 AFVLMSLESG PLMTMIILGT AGIASFEPHV FVGAVLPFLV GFALGNLDPE LREFFSKAVQ TLIPFFAFAL
0211 GNTIDLTVIA QTGLLGILLG VAVIIVTGIP LIIADKLIGG GDGTAGIAAS SSAGAAVATP VLIAEMVPAF
0281 KPMAPAATSL VATAVIVTSI LVPILTSIWS RKVKARAAKI EILGTVK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTATTGATTA AATGAATGTC TATCTTCGTT
-070 TCCATCAACA CTGATGCTCC ATTGAGGAAT TACGCATCAG CCCTTAAAAA TATGCCGACA GGTGATGGAA
0001 atgcagataa aacgctcgat tgagaaaatc ccggggggga tgatgctcgt cccgctattc cttggcgcac
0071 tgtgccacac cttctcgccg ggggcgggga aatattttgg atcattcacc aacgggatga ttaccggtac
0141 ggtgcccatt ctggcggtgt ggtttttttg catgggggcg tcaataaaat taagcgcgac gggaacggta
0211 ctgcgtaaat ccggtacgct ggtggtaact aaaattgccg tcgcgtgggt ggttgcggca attgcctcgc
0281 gtattattcc ggaacatggt gttgaagttg gattctttgc cggactttca acgctggcgc tggtggcggc
0351 gatggatatg accaatggcg gactttacgc ttccatcatg cagcagtacg gcacaaaaga agaagctggg
0421 gcatttgtgt tgatgtcgtt ggagtccggg ccgctcatga cgatgattat tctgggcact gccgggattg
0491 cctcgtttga accgcatgtt ttcgtcggcg cagtattacc gttcctggtg ggctttgccc tggggaacct
0561 tgaccctgaa ttgcgagaat ttttcagcaa agcggtgcaa acgctgattc cattctttgc cttcgcgctg
0631 ggcaatacca ttgatttgac tgtgattgcc cagactggtt tgctggggat cctgttgggt gtggcagtaa
0701 ttatcgtgac cggtattccg ttgattatcg ccgataaatt gattggcggt ggcgatggca ctgccggaat
0771 tgccgcttcc agttccgcag gggccgcggt agcgacacct gtgctgattg cagaaatggt gcctgcgttt
0841 aaaccgatgg ctccggcagc aacttcgctg gtagcgacgg cggtcattgt gacttcgatt ctggtgccaa
0911 ttcttacctc tatctggtca cgtaaagtca aagccagagc agcgaaaatc gaaattttag gtacggtgaa
0981 ataaACCTGC TTCCTTAATC CCCACAGCCG GATGAACTAA CGTTCGTCCG GTTTGCTATT GAGTTCCTGC
1051 CTGGATACTT ACCGCGAAAA CAGCACGCCT GACA
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