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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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Deletion
|
OCR15
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
cadC
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Related strains
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Strains Search
|
Search strains by gene name:
cadC
Search strains by all related name:
cadC b4133 ECK4127 JW4094
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General information (Go to Linear View: )
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Gene Name
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cadC
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Alternative name
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b4133,ECK4127,JW4094
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Location, Length
|
4,358,419 - 4,359,957
(
-
)
;
93.94
min
;
1539
(bp) ,
512
(aa)
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Product
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DNA-binding transcriptional activator
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Operon Name
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cadC
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Note
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transcriptional activator of cad operon; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016563 - transcription activator activity; GO_process: GO:0009063 - cellular amino acid catabolic process; GO_process: GO:0006350 - transcription
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Function
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regulator; Degradation of small molecules: Amino acids
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Gene Ontology
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GO:0000156
;
two-component response regulator activity ( cadC )
GO:0000160
;
two-component signal transduction system (phosphorelay) ( cadC )
GO:0003677
;
DNA binding ( cadC )
GO:0005622
;
intracellular ( cadC )
GO:0006350
;
transcription ( cadC )
GO:0006355
;
regulation of transcription, DNA-dependent ( cadC )
GO:0016020
;
membrane ( cadC )
GO:0016021
;
integral to membrane ( cadC )
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PID
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1790576
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
[
2
more]
)
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Entry name(Acc.no)
|
CADC_ECOLI
(
P23890
)
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- Protein name
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Transcriptional activator cadC.
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- Synonyms
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- Gene name
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Name=cadC; OrderedLocusNames=b4133;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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cadC
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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Chain A, Crystal Structure Of Dna-Binding Domain Of Bacillus Subtilis Yycf
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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Transcriptional activator cadC
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PSI-BLAST
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Transcriptional activator cadC
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nr
(database updated :
2007.02.20
)
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BLAST
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DNA-binding transcriptional activator [Escherichia coli K12]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
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MMBR References
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J Bacteriol. 1992;174:2670-2678
Regulation of the Escherichia coli cad operon: location of a site required for acid induction.
Meng, S. Y., and G. N. Bennett.
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J Bacteriol. 1996;178:5522-5528
Kinetics of expression of the Escherichia coli cad operon as a function of pH and lysine.
Neely, M. N., and E. R. Olson.
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J Bacteriol. 1992;174:530-540
Identification of elements involved in transcriptional regulation of the Escherichia coli cad operon by external pH.
Watson, N., D. S. Dunyak, E. L. Rosey, J. L. Slonczewski, and E. R. Olson.
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| Sequences |
Amino acid
FASTA format
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0001 MQQPVVRVGE WLVTPSINQI SRNGRQLTLE PRLIDLLVFF AQHSGEVLSR DELIDNVWKR SIVTNHVVTQ
0071 SISELRKSLK DNDEDSPVYI ATVPKRGYKL MVPVIWYSEE EGEEIMLSSP PPIPEAVPAT DSPSHSLNIQ
0141 NTATPPEQSP VKSKRFTTFW VWFFFLLSLG ICVALVAFSS LDTRLPMSKS RILLNPRDID INMVNKSCNS
0211 WSSPYQLSYA IGVGDLVATS LNTFSTFMVH DKINYNIDEP SSSGKTLSIA FVNQRQYRAQ QCFMSIKLVD
0281 NADGSTMLDK RYVITNGNQL AIQNDLLESL SKALNQPWPQ RMQETLQKIL PHRGALLTNF YQAHDYLLHG
0351 DDKSLNRASE LLGEIVQSSP EFTYARAEKA LVDIVRHSQH PLDEKQLAAL NTEIDNIVTL PELNNLSIIY
0421 QIKAVSALVK GKTDESYQAI NTGIDLEMSW LNYVLLGKVY EMKGMNREAA DAYLTAFNLR PGANTLYWIE
0491 NGIFQTSVPY VVPYLDKFLA SE
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tgcattcacc aataatatgt aaataaaccc
-070 atctatagat ggtaaaaata ggttgtggca attatcattg catcattccc ttttcgaatg agtttctatt
0001 atgcaacaac ctgtagttcg cgttggcgaa tggcttgtta ctccgtccat aaaccaaatt agccgcaatg
0071 ggcgtcaact tacccttgag ccgagattaa tcgatcttct ggttttcttt gctcaacaca gtggcgaagt
0141 acttagcagg gatgaactta tcgataatgt ctggaagaga agtattgtca ccaatcacgt tgtgacgcag
0211 agtatctcag aactacgtaa gtcattaaaa gataatgatg aagatagtcc tgtctatatc gctactgtac
0281 caaagcgcgg ctataaatta atggtgccgg ttatctggta cagcgaagaa gagggagagg aaataatgct
0351 atcttcgcct ccccctatac cagaggcggt tcctgccaca gattctccct cccacagtct taacattcaa
0421 aacaccgcaa cgccacctga acaatcccca gttaaaagca aacgattcac taccttttgg gtatggtttt
0491 ttttcctgtt gtcgttaggt atctgtgtag cactggtagc gttttcaagt cttgatacac gtcttcctat
0561 gagcaaatcg cgtattttgc tcaatccacg cgatattgac attaatatgg taaataaaag ttgtaacagc
0631 tggagttccc cgtatcagct ctcttacgcg ataggcgtgg gtgatttggt ggcgacatca cttaacacct
0701 tctccacctt tatggtgcat gacaaaatca actacaacat tgatgaaccg agcagttccg gtaaaacatt
0771 atctattgcg tttgttaatc agcgccaata ccgtgctcaa caatgcttta tgtcgataaa attggtagac
0841 aatgcagatg gttcaaccat gctggataaa cgttatgtca tcactaacgg taatcagctg gcgattcaaa
0911 atgatttact ggagagttta tcaaaagcgt taaaccaacc gtggccacaa cgaatgcagg agacgctcca
0981 gaaaattttg ccgcatcgtg gtgcgttatt aactaatttt tatcaggcac atgattattt actgcatggc
1051 gatgataaat cattgaaccg tgccagtgaa ttattaggtg agattgttca atcatcccca gaatttacct
1121 acgcgagagc agaaaaagca ttagttgata tcgtgcgcca ttctcaacat cctttagatg aaaaacaatt
1191 agcagcactg aacacagaaa tagataacat tgttacactg ccggaattga acaacctgtc cattatatat
1261 caaataaaag cggtcagtgc tctggtaaaa ggtaaaacag atgagtctta ccaggcgata aatactggca
1331 ttgatcttga aatgtcctgg ctaaattatg tgttgcttgg caaggtttat gaaatgaagg ggatgaaccg
1401 ggaagcagct gatgcatatc tcaccgcctt taatttacgc ccaggggcaa acacccttta ctggattgaa
1471 aatggtatat tccagacttc tgttccttat gttgtacctt atctcgacaa atttcttgct tcagaataag
1541 taactccggg ttgatttatg ctcggaaata tttgttgttg agtttttgta tgttcctgtt ggtataatat
1611 gttgcggcaa tttatttgcc gcataattt
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