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PEC Original Annotations
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Essentiality
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Class
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non-essential
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|
References (PMID)
|
|
|
Deletion
|
OCR44-11
(D)
,
OCR44-5
(D)
,
OCR44-9
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
sfmH
|
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Related strains
|
|
Strains Search
|
Search strains by gene name:
sfmH
Search strains by all related name:
sfmH b0533 ECK0526 fimH JW5071 o325a
|
General information (Go to Linear View: )
|
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Gene Name
|
sfmH
|
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Alternative name
|
b0533,ECK0526,fimH,JW5071,o325a
|
|
Location, Length
|
561,559 - 562,542
(
+
)
;
12.10
min
;
984
(bp) ,
327
(aa)
|
|
Product
|
putative fimbrial-like adhesin protein
|
|
Operon Name
|
sfmHF
|
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Note
|
involved in fimbrial asembly; GO_component: GO:0019861 - flagellum; GO_process: GO:0009296 - flagellum assembly; GO_process: GO:0042330 - taxis
|
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Function
|
|
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Gene Ontology
|
GO:0005515
;
protein binding ( fimH )
GO:0005529
;
sugar binding ( sfmH )
GO:0005537
;
mannose binding ( sfmH )
GO:0007155
;
cell adhesion ( fimH )
GO:0007155
;
cell adhesion ( sfmH )
GO:0009289
;
fimbrium ( fimH )
GO:0009289
;
fimbrium ( sfmH )
GO:0042995
;
cell projection ( fimH )
GO:0042995
;
cell projection ( sfmH )
|
|
PID
|
145693100
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
SFMH_ECOLI
(
P75715
;
P77078
)
|
|
- Protein name
|
SfmH protein precursor.
|
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- Synonyms
|
|
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- Gene name
|
Name=sfmH; OrderedLocusNames=b0533;
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Homology Analysis
|
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BLAST
|
|
Bacteria
|
|
GTOP
|
sfmH
(
homologous genes of other bacterias
)
fimH
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein sfmH precursor
|
|
PSI-BLAST
|
Protein sfmH precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
FimH homolog [Escherichia coli]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MAMACLCLAN ISWATVCANS TGVAEDEHYD LSNIFNSTNN QPGQIVVLPE KSGWVGVSAI CPPGTLVNYT
0071 YRSYVTNFIV QETIDNYKYM QLHDYLLGAM SLVDSVMDIQ FPPQNYIRMG TDPNVSQNLP FGVMDSRLIF
0141 RLKVIRPFIN MVEIPRQVMF TVYVTSTPYD PLVTPVYTIS FGGRVEVPQN CELNAGQIVE FDFGDIGASL
0211 FSAAGPGNRP AGVMPQTKSI AVKCTNVAAQ AYLTMRLEAS AVSGQAMVSD NQDLGFIVAD QNDTPITPND
0281 LNSVIPFRLD AAAAANVTLR AWPISITGQK PTEGPFSALG YLRVDYQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CGAAGCAAAG CTTACAGCAA GCCGTCACTG
-070 TTATTTCGGC AGTTTGCACA CATCCTGGCT CATAAAGGAA ATTATCAATA AGATAATCTG CAGATTATTA
0001 ttggcgatgg catgtttgtg tctggcaaac atatcctggg ctactgtttg tgcaaatagt actggcgtag
0071 cagaagatga acactatgat ctctcaaata tctttaatag caccaataac cagccagggc agattgttgt
0141 tttaccggaa aaatccggct gggtaggtgt ctcagcaatt tgtccacccg gtacgctggt gaattataca
0211 taccgtagtt atgtcaccaa ctttattgtt caggaaacta tcgataatta taaatatatg caattacatg
0281 attatctatt aggtgcgatg agtctggttg atagtgtgat ggatattcag ttccccccgc aaaattatat
0351 tcggatggga acagatccta acgtttcgca aaaccttcca ttcggggtga tggattctcg tttaatattt
0421 cgtttaaagg ttattcgtcc ctttattaac atggtggaga tccccagaca ggtgatgttt accgtgtatg
0491 tgacatcaac gccttacgat ccgttggtta cacctgttta taccattagt tttggtggcc gggttgaagt
0561 accgcaaaac tgcgaattaa atgccgggca gattgttgaa tttgattttg gtgatatcgg cgcatcgtta
0631 tttagtgcgg cagggccggg taatcgacct gctggtgtca tgccgcaaac caagagcatt gcggtcaaat
0701 gtacgaatgt tgctgcgcag gcttatttaa caatgcgtct ggaagccagt gccgtttctg gtcaggcgat
0771 ggtgtcggac aatcaggatt taggttttat tgtcgccgat cagaacgata cgccgatcac gcctaacgat
0841 ctcaatagcg ttattccttt ccgtctggat gcagctgcgg cagccaatgt cacacttcgc gcctggccta
0911 tcagtattac cggtcaaaaa ccgaccgaag ggccgtttag cgcgctgggg tatttacgcg tcgattatca
0981 atgaGGTACG GAGAATGAGA AGAGTACTCT TTAGCTGTTT CTGCGGGCTA CTGTGGAGTT CCAGTGGATG
1051 GGCAGTTGAC CCTTTAGGAA CGATTAATAT CAAT
|
