|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(araA-leu)7697
,
OCR29
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yabI
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yabI
Search strains by all related name:
yabI b0065 ECK0066 JW5005
|
General information (Go to Linear View: )
|
|
Gene Name
|
yabI
|
|
Alternative name
|
b0065,ECK0066,JW5005
|
|
Location, Length
|
71,351 - 72,115
(
+
)
;
1.54
min
;
765
(bp) ,
254
(aa)
|
|
Product
|
inner membrane protein, SNARE_assoc family
|
|
Operon Name
|
yabI
|
|
Note
|
GO_component: GO:0009274 - peptidoglycan-based cell wall
|
|
Function
|
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( yabI )
GO:0016020
;
membrane ( yabI )
GO:0016021
;
integral to membrane ( yabI )
|
|
PID
|
1786252
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YABI_ECOLI
(
P30149
;
P75634
)
|
|
- Protein name
|
Hypothetical protein yabI.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yabI; OrderedLocusNames=b0065;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yabI
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Inner membrane protein yabI
|
|
PSI-BLAST
|
Inner membrane protein yabI
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
conserved inner membrane protein [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
|
| Sequences |
Amino acid
FASTA format
|
0001 MQALLEHFIT QSTVYSLMAV VLVAFLESLA LVGLILPGTV LMAGLGALIG SGELSFWHAW LAGIIGCLMG
0071 DWISFWLGWR FKKPLHRWSF LKKNKALLDK TEHALHQHSM FTILVGRFVG PTRPLVPMVA GMLDLPVAKF
0141 ITPNIIGCLL WPPFYFLPGI LAGAAIDIPA GMQSGEFKWL LLATAVFLWV GGWLCWRLWR SGKATDRLSH
0211 YLSRGRLLWL TPLISAIGVV ALVVLIRHPL MPVYIDILRK VVGV
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GTCAAGTTGT CATAATTGGT AACGAATCAG
-070 ACAATTGACG GCTTGACGGA GTAGCATAGG GTTTGCAGAA TCCCTGCTTC GTCCATTTGA CAGGCACATT
0001 atgcaagcat tgctggaaca ctttattacc caatccaccg tgtattcatt gatggcggtg gtgttggtgg
0071 cctttctgga gtcgctggcg ctggtcggtt tgattctacc cggtacggtg ctgatggcgg ggctgggagc
0141 gctgattggc agcggcgagt taagtttctg gcacgcctgg ctggcaggga ttattggctg cttgatgggc
0211 gactggattt ctttctggct gggttggcgt tttaaaaagc cgttgcatcg ctggtcattt ctgaagaaaa
0281 acaaagcact acttgataaa actgaacatg cgttgcatca acacagcatg ttcaccattc tggtcggtcg
0351 ttttgttggc ccgacgcgtc cgctggtgcc aatggtggcg ggaatgctgg atctgccggt ggctaaattt
0421 attacgccga atattatcgg ctgcctgctg tggccgccgt tttacttcct gccagggatt ctggcgggcg
0491 cggcgatcga tattcctgcc ggaatgcaga gcggtgagtt taaatggttg ctgctggcaa cagcggtgtt
0561 tttgtgggtt ggtggctggc tgtgctggcg gttatggcgc agcggtaaag cgactgaccg tttgagtcat
0631 tatttgtccc gcggtcgttt gttgtggctg acgccgttga tttctgccat cggcgtggtg gcgctggtgg
0701 tgttaattcg ccacccgttg atgccggtgt atatcgatat tttgcgtaaa gtggttgggg tttagGAGAT
0771 AGTCTTGTGC GGGTTGCCTG ATGCGACGCT TGCCGCGTCT TATCAGGCCT ACAAAACGCA CTACCCGTAG
0841 GTCGGATAAG GCGTTCACGC CGCAT
|
