|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL23
(D)
,
OCL23-14
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rrsD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rrsD
Search strains by all related name:
rrsD b3278 ECK3265 JWR0079
|
General information (Go to Linear View: )
|
|
rRNA Name
|
rrsD
|
|
Alternative name
|
b3278,ECK3265,JWR0079
|
|
Location, Length
|
3,425,243 - 3,426,784
(
-
)
;
73.83
min
;
1542
(bp) ,
|
|
Product
|
16S ribosomal RNA of rrnD operon
|
|
Operon Name
|
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
Adv Genet. 1995;33:1-39.
Mutational analysis of 16S ribosomal RNA structure and function in Escherichia coli.
Triman KL.
(
7484450
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 atacggattc ttaacgtcgc aagacgaaaa
-070 atgaatacca agtctcaaga gtgaacacgt aattcattac gaagtttaat tctttgagca tcaaactttt
0001 aaattgaaga gtttgatcat ggctcagatt gaacgctggc ggcaggccta acacatgcaa gtcgaacggt
0071 aacaggaaac agcttgctgt ttcgctgacg agtggcggac gggtgagtaa tgtctgggaa actgcctgat
0141 ggagggggat aactactgga aacggtagct aataccgcat aacgtcgcaa gaccaaagag ggggaccctc
0211 gggcctcttg ccatcggatg tgcccagatg ggattagctt gttggtgggg taacggctca ccaaggcgac
0281 gatccctagc tggtctgaga ggatgaccag ccacactgga actgagacac ggtccagact cctacgggag
0351 gcagcagtgg ggaatattgc acaatgggcg caagcctgat gcagccatgc cgcgtgtatg aagaaggcct
0421 tcgggttgta aagtactttc agcggggagg aagggagtaa agttaatacc tttgctcatt gacgttaccc
0491 gcagaagaag caccggctaa ctccgtgcca gcagccgcgg taatacggag ggtgcaagcg ttaatcggaa
0561 ttactgggcg taaagcgcac gcaggcggtt tgttaagtca gatgtgaaat ccccgggctc aacctgggaa
0631 ctgcatctga tactggcaag cttgagtctc gtagaggggg gtagaattcc aggtgtagcg gtgaaatgcg
0701 tagagatctg gaggaatacc ggtggcgaag gcggccccct ggacgaagac tgacgctcag gtgcgaaagc
0771 gtggggagca aacaggatta gataccctgg tagtccacgc cgtaaacgat gtcgacttgg aggttgtgcc
0841 cttgaggcgt ggcttccgga gctaacgcgt taagtcgacc gcctggggag tacggccgca aggttaaaac
0911 tcaaatgaat tgacgggggc ccgcacaagc ggtggagcat gtggtttaat tcgatgcaac gcgaagaacc
0981 ttacctggtc ttgacatcca cggaagtttt cagagatgag aatgtgcctt cgggaaccgt gagacaggtg
1051 ctgcatggct gtcgtcagct cgtgttgtga aatgttgggt taagtcccgc aacgagcgca acccttatcc
1121 tttgttgcca gcggtccggc cgggaactca aaggagactg ccagtgataa actggaggaa ggtggggatg
1191 acgtcaagtc atcatggccc ttacgaccag ggctacacac gtgctacaat ggcgcataca aagagaagcg
1261 acctcgcgag agcaagcgga cctcataaag tgcgtcgtag tccggattgg agtctgcaac tcgactccat
1331 gaagtcggaa tcgctagtaa tcgtggatca gaatgccacg gtgaatacgt tcccgggcct tgtacacacc
1401 gcccgtcaca ccatgggagt gggttgcaaa agaagtaggt agcttaacct tcgggagggc gcttaccact
1471 ttgtgattca tgactggggt gaagtcgtaa caaggtaacc gtaggggaac ctgcggttgg atcacctcct
1541 taccttaaag aagcgtactt tgcagtgctc acacagattg tctgatgaaa atgagcagta aaacctctac
1611 aggcttgtag ctcaggtggt tagagcgcac cc
|
