|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL23
(D)
,
OCL23-14
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rrfD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rrfD
Search strains by all related name:
rrfD b3274 ECK3261 JWR0075
|
General information (Go to Linear View: )
|
|
rRNA Name
|
rrfD
|
|
Alternative name
|
b3274,ECK3261,JWR0075
|
|
Location, Length
|
3,421,690 - 3,421,809
(
-
)
;
73.75
min
;
120
(bp) ,
|
|
Product
|
5S ribosomal RNA of rrnD operon
|
|
Operon Name
|
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
Nucleic Acids Res. 1980;8:3793-3807
The distal end of the ribosomal RNA operon rrnD of Escherichia coli contains a tRNA1thr gene, two 5s rRNA genes and a transcription terminator.
Duester, G., and W. M. Holmes.
|
FEBS Lett. 1996;394(1):71-5.
5S rRNA sugar-phosphate backbone protection in complexes with specific ribosomal proteins.
Shpanchenko OV, Zvereva MI, Dontsova OA, Nierhaus KH, Bogdanov AA.
(
8925931
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ttaaccttac aacgccgaag ctgttttggc
-070 ggatgagaga agattttcag cctgatacag attaaatcag aacgcagaag cggtctgata aaacagaatt
0001 tgcctggcgg ccgtagcgcg gtggtcccac ctgaccccat gccgaactca gaagtgaaac gccgtagcgc
0071 cgatggtagt gtggggtctc cccatgcgag agtagggaac tgccaggcat caaatttagc gtgctgatat
0141 ggctcagttg gtagagcgca cccttggtaa gggtgaggtc cccagttcga ctctgggtat cagcaccact
0211 ttttaggtta
|
