|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Microbiol Mol Biol Rev. 1998;62(3):814-984
Linkage map of Escherichia coli K-12, edition 10: the traditional map.
Berlyn MK.
(
9729611
)
|
|
|
Deletion
|
OCL61
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
lysV
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
lysV
Search strains by all related name:
lysV b2404 ECK2398 JWR0050 supN
|
General information (Go to Linear View: )
|
|
tRNA Name
|
lysV
|
|
Alternative name
|
b2404,ECK2398,JWR0050,supN
|
|
Location, Length
|
2,519,275 - 2,519,350
(
+
)
;
54.30
min
;
76
(bp) ,
|
|
Product
|
tRNA-Lys
|
|
Operon Name
|
valUXY-lysV
|
|
Note
|
anticodon: UUU
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
Microbiol. Rev. 1988;52:354-374.
Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli.
Eggertsson, G., and D. Soll.
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
Nucleic Acids Res. 1990;18(3):672
Sequence of E.coli K12 valU operon which contains 3 genes for tRNA(Val1) and 1 gene for tRNA(Lys).
O'Connor M, Gesteland RF, Atkins JF.
(
2408024
)
|
J Bacteriol. 1985;163(3):1288-9.
supN ochre suppressor gene in Escherichia coli codes for tRNALys.
Uemura H, Thorbjarnardottir S, Gamulin V, Yano J, Andresson OS, Soll D, Eggertsson G.
(
3897192
)
|
J Mol Biol. 1990;214(4):825-43.
Precise mapping and comparison of two evolutionarily related regions of the Escherichia coli K-12 chromosome. Evolution of valU and lysT from an ancestral tRNA operon.
Brun YV, Breton R, Lanouette P, Lapointe J.
(
2201776
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AAAATGTGAA GTACCGAAGT GGGTGATTAG
-070 CTCAGCTGGG AGAGCACCTC CCTTACAAGG AGGGGGTCGG CGGTTCGATC CCGTCATCAC CCACCACTTC
0001 gggtcgttag ctcagttggt agagcagttg acttttaatc aattggtcgc aggttcgaat cctgcacgac
0071 ccaccaATGT AAAAAAGCGC CCTAAAGGCG CTTTTTTACT ATCTGCGATA CTCAAAGATT CGAACCTGCA
0141 GCAGGTTTGA GTTGAGCGCA GCGAAACAAC GGAGCC
|
