|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
16-1-2
(LD)
,
DE(sbcB-rfb)202
,
OCL74-2,75-5 (LD 16-1-2_CRS)
(D)
,
OCL74-2,75-6 (LD 16-1-2_P/O)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
cyaR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
cyaR
Search strains by all related name:
cyaR b4438 ECK2078 JWR0243 ryeE
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
cyaR
|
|
Alternative name
|
b4438,ECK2078,JWR0243,ryeE
|
|
Location, Length
|
2,165,138 - 2,165,224
(
+
)
;
46.67
min
;
87
(bp) ,
|
|
Product
|
sRNA antisense regulator of ompX mRNA instability, Hfq-dependent, cAMP-induced
|
|
Operon Name
|
|
|
Note
|
identified in a large scale screen
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCCCCACGGT AAGTGATTAA TTTCGATTAT
-070 TTTTCCCGGA TGGAAAATTC TTAGAAACCG ATCACATACA GCTGCATTTA TTAAGGTTAT CATCCGTTTC
0001 gctgaaaaac ataacccata aaatgctagc tgtaccagga accacctcct tagcctgtgt aatctccctt
0071 acacgggctt attttttACG CGTAATACAA TGAAATAAAA GGATTTATTT CTGGTCACGT CCACACATTG
0141 ACCACATCGA CAAAAAAGCC CCTCGACTGA GGGGCTTCCT GTTTCTA
|
