|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL56-10
(D)
,
OCL56-26
(D)
,
OCL56-29
(D)
,
OCL56-33 (BK6-7 / AK4-7)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ryfA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ryfA
Search strains by all related name:
ryfA b4440 ECK2518 JWR0244 PAIR3b tp1
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
ryfA
|
|
Alternative name
|
b4440,ECK2518,JWR0244,PAIR3b,tp1
|
|
Location, Length
|
2,651,877 - 2,652,180
(
+
)
;
57.16
min
;
304
(bp) ,
|
|
Product
|
novel sRNA, function unknown
|
|
Operon Name
|
ryfA
|
|
Note
|
identified in a large scale screen
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AGTAATGCAA GCGCGTCTCA GCGGAGACAA
-070 TACTCGCCAG TAACTCTCTT TTTGTCAAGC AAAAGAGAGT TATTATTGTT CTGTTAGTGT ATTATCCACT
0001 gcggcccttt ccgccgtctc gcaaacgggc gctggcttta ggaaaggatg ttccgtggcc gtaaatgcag
0071 gtgtttcaca gcgcttgcta tcgcggcaat atcgccagtg gtgctgtcgt gatgcggtct tcgcatggac
0141 cgcacaatga agatacggtg cttttgtatc gtacttattg tttctggtgc gctgttaacc gaggtaaata
0211 ataaccggag tctctccggc gacaatttac tggtggttaa caaccttcag agcagcaagt aagcccgaat
0281 gccgcccttt gggcggcata ttttAGATTA TCCGATTCTG TTTAAAGTCA CGCAAAAAAC CACCCCAGCG
0351 ACGTTCATAG AATGGCGCAA TATGTTCGGT AATAAAGTGG CTAATTCCTT TTTC
|
