|
PEC Original Annotations
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Essentiality
|
|
Class
|
non-essential
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References (PMID)
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|
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Deletion
|
OCL44
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
omrA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
omrA
Search strains by all related name:
omrA b4444 ECK2833 JWR0248 PAIR2a psrA12 rygA sraE t59
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
omrA
|
|
Alternative name
|
b4444,ECK2833,JWR0248,PAIR2a,psrA12,rygA,sraE,t59
|
|
Location, Length
|
2,974,124 - 2,974,211
(
-
)
;
64.10
min
;
88
(bp) ,
|
|
Product
|
sRNA antisense regulator downregulates OMproteins and curli; positively regulated by OmpR/EnvZ, Hfq-dependent
|
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Operon Name
|
omrA
|
|
Note
|
identified in a large scale screen
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Function
|
|
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Gene Ontology
|
|
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PID
|
|
EC number
(KEGG Pathway)
|
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Homology Analysis
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BLAST
|
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Bacteria
|
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GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
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SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
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BLAST
|
|
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tgtaacagta accgacaatt tacacacctc
-070 gttgcatttc ccttcattcc tttgcgtttt ctcgctggcg aagagtcgtc gtgcagacca caatcaagat
0001 cccagaggta ttgattggtg agattattcg gtacgctctt cgtaccctgt ctcttgcacc aacctgcgcg
0071 gatgcgcagg ttttttttcg cacctaattt actgtcgctc gcgttcttta tctcgtgtaa tctccctcca
0141 ttcgctttta ctgaatcaga gcaaagggag ttggaatgct ttttagct
|
