|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL35
(D)
,
OCL35-12
(D)
,
OCL35-13
(D)
,
OCL35-4
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
sibD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
sibD
Search strains by all related name:
sibD b4447 C0730 ECK3041 IS156 JWR0251 QUAD1d rygD tp8
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
sibD
|
|
Alternative name
|
b4447,C0730,ECK3041,IS156,JWR0251,QUAD1d,rygD,tp8
|
|
Location, Length
|
3,192,745 - 3,192,887
(
-
)
;
68.81
min
;
143
(bp) ,
|
|
Product
|
sRNA antisense regulator of toxic IbsD protein
|
|
Operon Name
|
|
|
Note
|
identified in a large scale screen
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 agcggaacgc agatataaaa aatccccggc
-070 tttttgggcc agggatatgt gttaatgaaa ccttcttgac gctgattttt tttcaaccta aagtaaagga
0001 acaagggtga gggaggattt ctcccccctc tgattggctg ttaataagct gcgaaactta cgagtaacaa
0071 cacaatcagt atgatgacga gcttcatcat aaccctttcc ttctgtaagg cccccttctt cgggaggggc
0141 tttcccgttt cagccccctg ctgactcccc gattgttgat gagcgccaga ccccacgcaa tgctttctct
0211 gatgcagttt tgccttcccc gagccgtcac gca
|
