|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL18
(D)
,
OCL18-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ryhB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ryhB
Search strains by all related name:
ryhB b4451 ECK3426 IS176 JWR0219 psrA18 sraI
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
ryhB
|
|
Alternative name
|
b4451,ECK3426,IS176,JWR0219,psrA18,sraI
|
|
Location, Length
|
3,578,950 - 3,579,039
(
-
)
;
77.14
min
;
90
(bp) ,
|
|
Product
|
sRNA antisense regulator mediating positive Fur regulon response, Hfq-dependent; global iron regulator
|
|
Operon Name
|
ryhB
|
|
Note
|
Fur represses this inhibitory RNA, relieving acnA, fumA, sdhCDAB, bfr, ftnA, and sodB from RyhB-mediated repression; gvcB is regulated by gcvA and gcvR
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aatgtccctt tcaacatcat tgactttcaa
-070 atgcgagtca aatgcatttt tttgcaaaaa gtgttggaca agtgcgaatg agaatgatta ttattgtctc
0001 gcgatcagga agaccctcgc ggagaacctg aaagcacgac attgctcaca ttgcttccag tattacttag
0071 ccagccgggt gctggctttt tttttgatct ttcgttctca atttatccac gggagtgctt gtgttcgtta
0141 tgcgcactcc agtaggaacc acgtccgctt tgcgctaagg tgtaaataac
|
