|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
2-1
(LD)
,
OCL10,16-3 (LD 2-1'_CRS)
(D)
,
OCL10,16-4 (LD 2-1'_P/O)
(D)
,
OCL13
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rdlD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rdlD
Search strains by all related name:
rdlD b4454 ECK3525 JWR0256
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
rdlD
|
|
Alternative name
|
b4454,ECK3525,JWR0256
|
|
Location, Length
|
3,698,159 - 3,698,224
(
+
)
;
79.71
min
;
66
(bp) ,
|
|
Product
|
sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR-D repeat, with toxic peptide LdrD
|
|
Operon Name
|
rdlD
|
|
Note
|
antisense RNA, trans-acting regulator of ldrD translation
|
|
Function
|
component of addiction module
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CCGGAGCCGC TAAATCATGC CAGAAGGCCA
-070 TGCCCAGCTC TGCGAACGTC ATATAGCCGC CTGTGTTGTA ATGACAACGT TTCGCGGCTA TTCTTGAGTG
0001 gtctagagtc aagattagcc cccgtggtgt tgtcaggtgc atacctgcaa cgtgcggggg ttttctCTCT
0071 CCAGCAACCA ATGCCACCAG GGATAAAGCC CCCGCAACAT TGCGCCTCAC CGGAACCTTT CCGGCTTGCC
0141 GCTGATTCTA CGATTGCTTT TTACTG
|
