|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL46
(D)
,
OCL46-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
sokX
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
sokX
Search strains by all related name:
sokX b4701 ECK4514
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
sokX
|
|
Alternative name
|
b4701,ECK4514
|
|
Location, Length
|
2,885,376 - 2,885,431
(
+
)
;
62.19
min
;
56
(bp) ,
|
|
Product
|
sok-related sRNA, function unknown
|
|
Operon Name
|
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATATCAGCGG GCTATTTTTC GATGCTGCTC
-070 ATAAATATCG AATTACAGTG ATATACACAT GTCTTGCCTC CCTGCAAAGA AGAGACTAAC ATTCGAATTG
0001 tttgggttcg aacgctggcc tcaggttgat agaaatatcg cctggggctt ttgtccATCT GGAACCTCGC
0071 GAATGCTTAA CGCCAGACAG CCTCAAGCAC CCGACGCCAT TCTATACCTG ATAATTCTTC CCGCGGCGTT
0141 CACGTTTAAA ATCAGG
|
