MG1655
W3110
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  Pfam List
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Total Hit : 180 | First   Previous  1-50    51-100   101-150   151-180   Next   Last
Symbol
RadC yeeS, yfjY, yicR, ykfG 
4   
PF04002.11  Kerrison ND, Finn RD, Iyer LM, Zhang D, Aravind L  RadC-like JAB domain 
Radical_SAM aslB, bioB, epmB, hemN, lipA, miaB, moaA, pflA, pflC, queE, rimO, rlmN, thiH, ybiY, ydeM, yggW, ygiQ, yhcC, yjjW 
19   
PF04055.17  Bateman A  Radical SAM superfamily 
Radical_SAM_C yhcC 
1   
PF16199.1  Coggill P  Radical_SAM C-terminal domain 
Radical_SAM_N ygiQ 
1   
PF08497.6  Wuster A  Radical SAM N-terminal 
RapA_C rapA 
1   
PF12137.4  Assefa S, Bateman A, Coggill P  RNA polymerase recycling family C-term.. 
RBFA rbfA 
1   
PF02033.14  Mian N, Bateman A  Ribosome-binding factor A 
RbsD_FucU fucU, rbsD 
2   
PF05025.9  Moxon SJ, Bateman A  RbsD / FucU transport protein family 
RcnB rcnB 
1   
PF11776.4  Mistry J  Nickel/cobalt transporter regulator 
RcsC rcsC 
1   
PF09456.6  Coggill P  RcsC Alpha-Beta-Loop (ABL) 
RcsD_ABL rcsD 
1   
PF16359.1  Eberhardt RY  RcsD-ABL domain 
RcsF rcsF 
1   
PF16358.1  Eberhardt RY  RcsF lipoprotein 
RdgC rdgC 
1   
PF04381.8  Kerrison ND  Putative exonuclease, RdgC 
RecA recA 
1   
PF00154.17  Sonnhammer ELL  recA bacterial DNA recombination protein 
Recombinase ybcK 
1   
PF07508.9  Studholme D  Recombinase 
RecO_C recO 
1   
PF02565.11  Mian N, Bateman A  Recombination protein O C terminal 
RecO_N recO 
1   
PF11967.4  Mian N, Bateman A  Recombination protein O N terminal 
RecQ_Zn_bind recQ 
1   
PF16124.1  Eberhardt RY  RecQ zinc-binding 
RecR recR 
1   
PF02132.11  Mian N, Bateman A  RecR protein 
RecT recT 
1   
PF03837.10  Aravind L  RecT family 
RecX recX 
1   
PF02631.12  Mian N, Bateman A  RecX family 
Redoxin dsbE, tpx 
2   
PF08534.6  Mistry J  Redoxin 
Reductase_C hcaD 
1   
PF14759.2  Eberhardt R  Reductase C-terminal 
RelA_SpoT relA, spoT 
2   
PF04607.13  Kerrison ND  Region found in RelA / SpoT proteins 
RelB dinJ, relB 
2   
PF04221.8  Mifsud W  RelB antitoxin 
ResIII hsdR, uvrB, yejH, yoaA 
4   
PF04851.11  Finn RD, Mifsud W  Type III restriction enzyme, res subunit 
Resolvase pinE, pinQ, pinR, ybcK 
4   
PF00239.17  Finn RD, Griffiths-Jones SR, Bateman A  Resolvase, N terminal domain 
Response_reg arcA, arcB, atoC, baeR, barA, basR, cheB, cheY, cpxR, creB, cusR, dcuR, dpiA, evgA, evgS, fimZ, glnG, glrR, kdpE, narL, narP, ompR, phoB, phoP, qseB, rcsB, rcsC, rssB, rstA, torR, torS, uhpA, uvrY, yedW, yehT, ypdB, zraR 
37   
PF00072.20  Sonnhammer ELL, Griffiths-Jones SR, Finn R, Fenech M  Response regulator receiver domain 
RF-1 arfB, prfA, prfB 
3   
PF00472.16  Bateman A, Finn RD  RF-1 domain 
RF3_C prfC 
1   
PF16658.1  Punta M  Class II release factor RF3, C-termina.. 
RhaA rhaA 
1   
PF06134.7  Moxon SJ  L-rhamnose isomerase (RhaA) 
RhaT rhaT 
1   
PF06379.8  Moxon SJ  L-rhamnose-proton symport protein (RhaT) 
RHH_1 nikR, ybfE, yiiE 
3   
PF01402.17  Bateman A  Ribbon-helix-helix protein, copG family 
Rhodanese glpE, pspE, sseA, yceA, ygaP, yibN, ynjE 
9   
PF00581.16  Bateman A  Rhodanese-like domain 
Rhodanese_C yceA 
1   
PF12368.4  Gavin OL  Rhodanase C-terminal 
Rhomboid glpG 
1   
PF01694.18  Sohrmann M, Bateman A  Rhomboid family 
Rhomboid_N glpG 
1   
PF12122.4  Assefa S, Bateman A  Cytoplasmic N-terminal domain of rhomb.. 
Rho_N rho 
1   
PF07498.8  Finn, RD  Rho termination factor, N-terminal dom.. 
Rho_RNA_bind rho 
1   
PF07497.8  Finn, RD  Rho termination factor, RNA-binding do.. 
RHS rhsA, rhsB, rhsC, rhsD 
4   
PF03527.10  Griffiths-Jones SR  RHS protein 
RHS_repeat rhsA, rhsB, rhsC, rhsD 
27   
PF05593.10  Yeats C  RHS Repeat 
RibD_C ribD 
1   
PF01872.13  Enright A, Ouzounis C, Bateman A  RibD C-terminal domain 
Ribonuclease_P rnpA 
1   
PF00825.14  Bateman A  Ribonuclease P 
Ribonuclease_T2 rna 
1   
PF00445.14  Finn RD  Ribonuclease T2 family 
Ribonucleas_3_3 rnc 
1   
PF14622.2  Wood V, Coggill P  Ribonuclease-III-like 
Ribonuc_L-PSP ridA, rutC, tdcF, yjgH, yoaB 
5   
PF01042.17  Bateman A, Finn RD, Kerrison ND  Endoribonuclease L-PSP 
Ribonuc_red_lgC nrdA, nrdE 
3   
PF02867.11  Finn RD, Griffiths-Jones SR  Ribonucleotide reductase, barrel domain 
Ribonuc_red_lgN nrdA, nrdE 
2   
PF00317.17  Finn RD, Griffiths-Jones SR  Ribonucleotide reductase, all-alpha do.. 
Ribonuc_red_sm nrdB, nrdF 
2   
PF00268.17  Finn RD, Griffiths-Jones SR  Ribonucleotide reductase, small chain 
Ribosomal_L1 rplA 
1   
PF00687.17  Bateman A  Ribosomal protein L1p/L10e family 
Ribosomal_L10 rplJ 
1   
PF00466.16  Finn RD  Ribosomal protein L10 
Total Hit : 180 | First   Previous  1-50    51-100   101-150   151-180   Next   Last