NIG-Fly - Fly Stocks of National Institute of Genetics -

Notice:
Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.

NIG-RNAi Strains Detail

Request : Click the "Order" button to request for this stock

Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID 10007R-2

Symbol Tango9 Full Name Transport and Golgi organization 9

CG No CG10007 Old CG No CG10007

Synonyms CG10007, TANGO9, Tango9

Accession No (Link to NCBI)

Inserted Chr. ll

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees viable

Map Viewer

Reference
[Please submit your publication]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgTTTGTGCTCAGCGGCACCTTC

Primer Seq. 3'

aatctagaggtaccTAAGGCAACGTGACCAGGTCG

Predicted Fragment Size

IR fragment full Seq

0001 TTTGTGCTCA GCGGCACCTT CAACGTTCTG GTGGTGAAGT GGGCCAATCA ACAACAGGTA 
0061 ATCGGCAGCG ATGGAAAACT TCATGGATTT CAACATCCAG TGGTGTTCAC ACTGCTCATG 
0121 TTCCTGGGCG AGTTCCTGTG CTTTGCGGTC TTCAAGGTGA TCCGCCTGAT CTCCAATCGT 
0181 CGTGGAGTTA TATCCGATCT GGATAGCATC TTGTCGCAGG ACAGCAGTGA GTTCCGCCCT 
0241 GTTAGCATGC TATTGCCCAC TTTGCTGGAT GCGGCAGCCT CCATTCTGTT GTTCACCGGA 
0301 CTTTACTTNA CTTACGCCAC CAGCTTTCAG ATGATAAGAG GCGCCGCCCT GATCTTTGTG 
0361 GGCATCTTTA GCACCATGTT TCTGAATCAC ACGCTGACCG GACGGCACTG GCTGGCCATC 
0421 TTTACGATAT CGTGCGGCCT GCTGGACATT ATCAGTCTGG ACGTCCATCG CGTTGAATAC 
0481 GACCTGGTCA CGTTGCCTTA

in silico PCR Fragment

0001 tttgtgctca gcggcacctt caacgttctg gtggtgaagt gggccaatca acaacaggta 
0061 atcggcagcg atggaaaact tcatggattt caacatccag tggtgttcac actgctcatg 
0121 ttcctgggcg agttcctgtg ctttgcggtc ttcaaggtga tccgcctgat ctccaatcgt 
0181 cgtggagtta tatccgatct ggatagcatc ttgtcgcagg acagcagtga gttccgccct 
0241 gttagcatgc tattgcccac tttgctggat gcggcagcct ccattctgtt gttcaccgga 
0301 ctttacttga cttacgccac cagctttcag atgataagag gcgccgccct gatctttgtg 
0361 ggcatcttta gcaccatgtt tctgaatcac acgctgaccg gacggcactg gctggccatc 
0421 tttacgatat cgtgcggcct gctggacatt atcagtctgg acgtccatcg cgttgaatac 
0481 gacctggtca cgttgcctta

Assemble Data


10007R-2.IR full       1   TTTGTGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAACAGGTA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-2.in silico     1   TTTGTGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAACAGGTA 60


10007R-2.IR full       61  ATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGTGTTCACACTGCTCATG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-2.in silico     61  ATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGTGTTCACACTGCTCATG 120


10007R-2.IR full       121 TTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCAAGGTGATCCGCCTGATCTCCAATCGT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-2.in silico     121 TTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCAAGGTGATCCGCCTGATCTCCAATCGT 180


10007R-2.IR full       181 CGTGGAGTTATATCCGATCTGGATAGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-2.in silico     181 CGTGGAGTTATATCCGATCTGGATAGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCT 240


10007R-2.IR full       241 GTTAGCATGCTATTGCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-2.in silico     241 GTTAGCATGCTATTGCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGA 300


10007R-2.IR full       301 CTTTACTTNACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATCTTTGTG 360
                           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-2.in silico     301 CTTTACTTGACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATCTTTGTG 360


10007R-2.IR full       361 GGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACGGCACTGGCTGGCCATC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-2.in silico     361 GGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACGGCACTGGCTGGCCATC 420


10007R-2.IR full       421 TTTACGATATCGTGCGGCCTGCTGGACATTATCAGTCTGGACGTCCATCGCGTTGAATAC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-2.in silico     421 TTTACGATATCGTGCGGCCTGCTGGACATTATCAGTCTGGACGTCCATCGCGTTGAATAC 480


10007R-2.IR full       481 GACCTGGTCACGTTGCCTTA 500
                           ||||||||||||||||||||
10007R-2.in silico     481 GACCTGGTCACGTTGCCTTA 500

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	482	0	0	1	NM_141879.2	Transport and Golgi organization 9 CG10007-RA (Tango9), mRNA
0	0	2	3	2	NM_170337.1	widerborst CG5643-RB, transcript variant B (wdb), mRNA
0	0	2	3	2	NM_170338.1	widerborst CG5643-RD, transcript variant D (wdb), mRNA
0	0	2	3	2	NM_170340.1	widerborst CG5643-RF, transcript variant F (wdb), mRNA
0	0	2	3	2	NM_170341.1	widerborst CG5643-RG, transcript variant G (wdb), mRNA
0	0	2	3	2	NM_170336.1	widerborst CG5643-RA, transcript variant A (wdb), mRNA
0	0	2	3	2	NM_143312.2	widerborst CG5643-RC, transcript variant C (wdb), mRNA
0	0	2	3	2	NM_170339.1	widerborst CG5643-RE, transcript variant E (wdb), mRNA
0	0	2	2	4	NM_176716.2	CG7766-RB, transcript variant B (CG7766), mRNA
0	0	2	2	4	NM_132297.4	CG7766-RA, transcript variant A (CG7766), mRNA
0	0	1	4	2	NM_164502.1	synaptotagmin CG3139-RC, transcript variant C (syt), mRNA
0	0	1	4	2	NM_078736.2	synaptotagmin CG3139-RA, transcript variant A (syt), mRNA
0	0	1	4	2	NM_164501.1	synaptotagmin CG3139-RB, transcript variant B (syt), mRNA
0	0	1	4	2	NM_205897.1	synaptotagmin CG3139-RD, transcript variant D (syt), mRNA
0	0	1	3	3	NM_079000.2	Multi drug resistance 49 CG3879-RA (Mdr49), mRNA
0	0	1	3	3	NM_001014599.1	Acetyl Coenzyme A synthase CG9390-RC, transcript variant C (AcCoAS), mRNA
0	0	1	3	3	NM_168894.1	Acetyl Coenzyme A synthase CG9390-RA, transcript variant A (AcCoAS), mRNA
0	0	1	3	3	NM_079472.2	Acetyl Coenzyme A synthase CG9390-RB, transcript variant B (AcCoAS), mRNA
0	0	1	3	3	NM_132524.1	Cyp28c1 CG1895-RA (Cyp28c1), mRNA
0	0	1	3	2	NM_132242.4	CG1636-RA (CG1636), mRNA
0	0	1	3	2	NM_001014745.1	Adenylyl cyclase 35C CG9210-RB, transcript variant B (Ac13E), mRNA
0	0	1	3	2	NM_057951.2	Adenylyl cyclase 35C CG9210-RA, transcript variant A (Ac13E), mRNA
0	0	1	2	3	NM_139654.1	CG13722-RA (CG13722), mRNA
0	0	1	2	2	NM_164842.1	rolling stone CG9552-RA (rost), mRNA
0	0	0	10	20	NM_164808.2	CG31901-RA (CG31901), mRNA
0	0	0	6	5	NM_136777.2	CG30015-RB, transcript variant B (CG30015), mRNA
0	0	0	6	5	NM_165802.1	CG30015-RA, transcript variant A (CG30015), mRNA
0	0	0	5	2	NM_169574.1	suppressor of Hairy wing CG8573-RB, transcript variant B (su(Hw)), mRNA
0	0	0	5	2	NM_079625.2	suppressor of Hairy wing CG8573-RA, transcript variant A (su(Hw)), mRNA
0	0	0	5	2	NM_144399.1	CG18765-RA (CG18765), mRNA

Back