NIG-Fly - Fly Stocks of National Institute of Genetics -

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NIG-RNAi Strains Detail

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discarded

Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID 10007R-4

Symbol Tango9 Full Name Transport and Golgi organization 9

CG No CG10007 Old CG No CG10007

Synonyms CG10007, TANGO9, Tango9

Accession No (Link to NCBI)

Inserted Chr. lll

Insertional Mutation semi-lethal

Phenotype induced by Act5C-GAL4 at 28 degrees viable

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Reference
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Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgTTTGTGCTCAGCGGCACCTTC

Primer Seq. 3'

aatctagaggtaccTAAGGCAACGTGACCAGGTCG

Predicted Fragment Size

IR fragment full Seq

in silico PCR Fragment

Assemble Data


10007R-4.IR full       1   TTTGTGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAACAGGTA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-4.in silico     1   TTTGTGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAACAGGTA 60


10007R-4.IR full       61  ATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGTGTTCACACTGCTCATG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-4.in silico     61  ATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGTGTTCACACTGCTCATG 120


10007R-4.IR full       121 TTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCAAGGTGATCCGCCTGATCTCCAATCGT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-4.in silico     121 TTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCAAGGTGATCCGCCTGATCTCCAATCGT 180


10007R-4.IR full       181 CGTGGAGTTATATCCGATCTGGATAGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-4.in silico     181 CGTGGAGTTATATCCGATCTGGATAGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCT 240


10007R-4.IR full       241 GTTAGCATGCTATTGCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-4.in silico     241 GTTAGCATGCTATTGCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGA 300


10007R-4.IR full       301 CTTTACTTNACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATCTTTGTG 360
                           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-4.in silico     301 CTTTACTTGACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATCTTTGTG 360


10007R-4.IR full       361 GGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACGGCACTGGCTGGCCATC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-4.in silico     361 GGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACGGCACTGGCTGGCCATC 420


10007R-4.IR full       421 TTTACGATATCGTGCGGCCTGCTGGACATTATCAGTCTGGACGTCCATCGCGTTGAATAC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10007R-4.in silico     421 TTTACGATATCGTGCGGCCTGCTGGACATTATCAGTCTGGACGTCCATCGCGTTGAATAC 480


10007R-4.IR full       481 GACCTGGTCACGTTGCCTTA 500
                           ||||||||||||||||||||
10007R-4.in silico     481 GACCTGGTCACGTTGCCTTA 500

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	482	0	0	1	NM_141879.2	Transport and Golgi organization 9 CG10007-RA (Tango9), mRNA
0	0	2	3	2	NM_170337.1	widerborst CG5643-RB, transcript variant B (wdb), mRNA
0	0	2	3	2	NM_170338.1	widerborst CG5643-RD, transcript variant D (wdb), mRNA
0	0	2	3	2	NM_170340.1	widerborst CG5643-RF, transcript variant F (wdb), mRNA
0	0	2	3	2	NM_170341.1	widerborst CG5643-RG, transcript variant G (wdb), mRNA
0	0	2	3	2	NM_170336.1	widerborst CG5643-RA, transcript variant A (wdb), mRNA
0	0	2	3	2	NM_143312.2	widerborst CG5643-RC, transcript variant C (wdb), mRNA
0	0	2	3	2	NM_170339.1	widerborst CG5643-RE, transcript variant E (wdb), mRNA
0	0	2	2	4	NM_176716.2	CG7766-RB, transcript variant B (CG7766), mRNA
0	0	2	2	4	NM_132297.4	CG7766-RA, transcript variant A (CG7766), mRNA
0	0	1	4	2	NM_164502.1	synaptotagmin CG3139-RC, transcript variant C (syt), mRNA
0	0	1	4	2	NM_078736.2	synaptotagmin CG3139-RA, transcript variant A (syt), mRNA
0	0	1	4	2	NM_164501.1	synaptotagmin CG3139-RB, transcript variant B (syt), mRNA
0	0	1	4	2	NM_205897.1	synaptotagmin CG3139-RD, transcript variant D (syt), mRNA
0	0	1	3	3	NM_079000.2	Multi drug resistance 49 CG3879-RA (Mdr49), mRNA
0	0	1	3	3	NM_001014599.1	Acetyl Coenzyme A synthase CG9390-RC, transcript variant C (AcCoAS), mRNA
0	0	1	3	3	NM_168894.1	Acetyl Coenzyme A synthase CG9390-RA, transcript variant A (AcCoAS), mRNA
0	0	1	3	3	NM_079472.2	Acetyl Coenzyme A synthase CG9390-RB, transcript variant B (AcCoAS), mRNA
0	0	1	3	3	NM_132524.1	Cyp28c1 CG1895-RA (Cyp28c1), mRNA
0	0	1	3	2	NM_132242.4	CG1636-RA (CG1636), mRNA
0	0	1	3	2	NM_001014745.1	Adenylyl cyclase 35C CG9210-RB, transcript variant B (Ac13E), mRNA
0	0	1	3	2	NM_057951.2	Adenylyl cyclase 35C CG9210-RA, transcript variant A (Ac13E), mRNA
0	0	1	2	3	NM_139654.1	CG13722-RA (CG13722), mRNA
0	0	1	2	2	NM_164842.1	rolling stone CG9552-RA (rost), mRNA
0	0	0	10	20	NM_164808.2	CG31901-RA (CG31901), mRNA
0	0	0	6	5	NM_136777.2	CG30015-RB, transcript variant B (CG30015), mRNA
0	0	0	6	5	NM_165802.1	CG30015-RA, transcript variant A (CG30015), mRNA
0	0	0	5	2	NM_169574.1	suppressor of Hairy wing CG8573-RB, transcript variant B (su(Hw)), mRNA
0	0	0	5	2	NM_079625.2	suppressor of Hairy wing CG8573-RA, transcript variant A (su(Hw)), mRNA
0	0	0	5	2	NM_144399.1	CG18765-RA (CG18765), mRNA

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