Strains

cDNA/BAC/Fosmid

Plasmid for Knock-in Experiments

Information

Medaka Tools

Medaka Strain
in Publications

References
Lectures of
a conference

Related documents

Biological experiments for elementary, junior high and high school students (Japanese)
Medaka experiments that anyone can do (Japanese)
Life of my teacher Tatsuo AIDA (Japanese)

Featured Link

From spawning to hatching of medaka ~nibb×niconico 
A checklist of the parasites of medaka 
medaka SNP(Beta)
Official Endocrine Disruption Website
M-marker 2009
Ensembl Medaka
M-Base
NBRP Medaka Genome Project
MEPD
Genomicus - Synteny browser -
ZFIN
ZIRC
UTGB Medaka
UCSC In-Silico PCR
The Fish Biology Journal of Medaka (Vol.1 - Vol.3)
The Fish Biology Journal of Medaka (Vol.4 - Vol.11)
Introduction to Medaka (NBRP Online Forum 2020)

CLSTF00060     VD

Merge cluster information
Name CLSTF00060
Library ALL 79 cDNA [Download: FASTA]
olea 5 cDNA [Download: FASTA]
olea23j15  olea26c19  olea39j07  olea51h21  olea62b11 
oleb 5 cDNA [Download: FASTA]
oleb12e21  oleb29l19  oleb55o12  oleb59j15  oleb7f17 
olec 4 cDNA [Download: FASTA]
olec10n02  olec38e20  olec59f19  olec65g08 
olvl 30 cDNA [Download: FASTA]
olvl10d19  olvl12m18  olvl12n11  olvl13f20  olvl16k06  olvl18d16  olvl1f11  olvl20k19  olvl23c13  olvl23d15  olvl24d15  olvl28j18  olvl29i13  olvl2f11  olvl33k01  olvl33o12  olvl34i12  olvl34o12  olvl38j06  olvl49j09  olvl57d03  olvl57g12  olvl58d22  olvl59a08  olvl5i04  olvl61n10  olvl64g09  olvl64o12  olvl6n12  olvl7l17 
olli 21 cDNA [Download: FASTA]
olli10a02  olli10h08  olli20o22  olli21e11  olli22h12  olli25e04  olli2f03  olli30b19  olli38h02  olli39o04  olli3m23  olli43g02  olli55j08  olli58j07  olli59e04  olli60o05  olli61l03  olli6p14  olli7k09  olli8j11  olli8k10 
olbr 4 cDNA [Download: FASTA]
olbr20e24  olbr28k10  olbr7a18  olbr8a18 
olgi 2 cDNA [Download: FASTA]
olgi12k24  olgi57m08 
olki 1 cDNA [Download: FASTA]
olki10b20 
olsp 0 cDNA
olte 4 cDNA [Download: FASTA]
olte18p09  olte29c16  olte36c03  olte45f12 
olova 3 cDNA [Download: FASTA]
olova10b17  olova13m21  olova55p05 

Before using Assemble Viewer, please ensure that you have the latest version of Java. If you are not using the latest Java version, please download it here. http://java.com/ja/download/


Contig information - 1
Name Contig1
Clone count 1 clones
Length 718
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit Nuclear protein 1 [Anoplopoma fimbria]
Score 336
Evalue 1.08447e-29
Detail
Sequence [Download: FASTA]
>Contig1
GAACCAGCCGAGAACAGCCGAAGCAGCAGCAGGTCGAGCAGAAGACGCCATGAGCCACGTCGACG
TGAAGAACCTGAAGCCCTCCAGCTTCGAGGAGGAGCATTTCGACGAGTACGAGTACTACAACCTG
ACGGACAAATACGTGGAGGGTTCGGCCCGCAAAGGCAGAACCAAGAAGGAGGCCAGCGAGAACAC
GAACCGGCCCAACCCCGGCGGGCACGAGCGCAAGATCGTGGAGAAACTGCAGAACAGCGAGAAGA
AGGCAAAGGCGTGACCGCTGAGGTACCGACAGACCCCACCCGAACACCTATAGCCCCCCCCTGAC
GTCATCTAACCCCCCCCAACACCATCTCCATGGTTTTGATCCACTCACTAAAAACGTTCAGTCGA
AGTTTAAACTTCAGTTTTTCTGAAAGTCCAATGGTTTGATGATAAAGTGGGCGTGGCCAGGCCGA
CACTGGCACATGCGCACTGCGCAGTGGCTAAAAGTTCAATCCCGCTATTCAGTTAATATAAAACT
CCTATAGGTCGGAGCACGTGACTGTTGCCATGGAGACGATGCTGCTCCGGGTTGGCCGTTGTCTC
TCTCACTGAAGGGTTTCTGACCGGTCCGGTTCTGTCTCTGGTCCAGGACTACTCGGACGGATTGA
AACGGAAACAGAACATGGGCTTCTTGGCGACAAAGACGTGCAGGAGTGTTCCAGCGCCGAGGGGC
GGA

Contig information - 2
Name Contig2
Clone count 1 clones
Length 788
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit Nuclear protein 1 [Anoplopoma fimbria]
Score 188
Evalue 2.95523e-25
Detail
Sequence [Download: FASTA]
>Contig2
GGGAACCAGCCGAGAACAGCCGAAGCAGCAGCAGGTCGAGCAGAAGACGCCATGAGCCACGTCGA
CGTGAAGAACCTGAAGCCCTCCAGCTTCGAGGAGGAGCATTTCGACGAGTACGAGTACTACAACC
TGACGGACAAATACGTGGGTGAGGAGCCGCGGACCCCCCCCACACACACACACCACCCCCGGTTC
GGGTCGCGGGTCTGAGCTGTGTTTGTGTTACAGAGGGTTCGGCCCGCAAAGGCAGAACCAAGAAG
GAGGCCAGCGAGAACACGAACCGGCCCAACCCCGGCGGGCACGAGCGCAAGATCGTGGAGAAACT
GCAGAACAGCGAGAAGAAGGCAAAGGCGTGACCGCTGAGGTACCGACAGACCCCACCCGAACACC
TATAGCCCCCCCCTGACGTCATCTAACCCCCCCCAACACCATCTCCATGGTTTTGATCCACTCAC
TAAAAACGTTCAGTCGAAGTTTAAACTTCAGTTTTTCTGAAAGTCCAATGGTTTGATGATAAAGT
GGGCGTGGCCAGGCCGACACTGGCACATGCGCACTGCGCAGTGGCTAAAAGTTCAATCCCGCTAT
TCAGTTAATATAAAACTCCTATAGGTCGGAGCACGTGACTGTTGCCATGGAGACGATGCTGCTCC
GGGTTGGCCGTTGTCTCTCTCACTGAAGGGTTTCTGACCGGTCCGGTTCTGTCTCTGGTCCAGGA
CTACTCGGACGGATTGAAAACGGAAACAGAACATGGGCTTCTTGGCGACAAAGACGTGCAGGAGT
GTTCCAGC

Contig information - 3
Name Contig3
Clone count 2 clones
Length 604
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit Nuclear protein 1 [Anoplopoma fimbria]
Score 188
Evalue 1.68261e-25
Detail
Sequence [Download: FASTA]
>Contig3
GGAACCAGCCGAGAACAGCCGAAGCAGCAGCAGGTCGAGCAGAAGACGCCATGAGCCACGTCGAC
GTGAAGAACCTGAAGCCCTCCAGCTTCGAGGAGGAGCATTTCGACGAGTACGAGTACTACAACCT
GACGGACAAATACGTGGGTGAGGAGCCGCGGACCCCCCCCACACACACACACCACCCCCGGTTCG
GGTCGCGGGTCTGAGCTGTGTTTGTGTTACAGAGGGTTCGGCCCGCAAAGGCAGAACCAAGAAGG
AGGCCAGCGAGAACACGAACCGGCCCAACCCCGGCGGGCACGAGCGCAAGATCGTGGAGAAACTG
CAGAACAGCGAGAAGAAGGCAAAGGCGTGACCGCTGAGGACTACTCGGACGGATTGAAACGGAAA
CAGAACATGGGCTTCTTGGCGACAAAGACGTGCAGGAGTGTTCCAGCGCCGAGGGGCGGAGTTTC
GAGAGGGCGTGGCCATTCGGCCCAAGAGGAAGCGGGCTCTTTGCACCTGGTTGGTGGTTTGGTCC
GGGTTCGGACCGTGACTGTGCATCAGTGATGGGTTTTATGTTTTAAAGTCTTTTTCATTTTTTAC
TATTAAAGGTGTTTTTTAA

Contig information - 4
Name Contig4
Clone count 49 clones
Length 583
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit Nuclear protein 1 [Anoplopoma fimbria]
Score 336
Evalue 6.77791e-30
Detail
Sequence [Download: FASTA]
>Contig4
GGGAACCAGCCGAGAACAGCCGAAGCAGCAGCAGGTCGAGCAGAAGACGCCATGAGCCACGTCGA
CGTGAAGAACCTGAAGCCCTCCAGCTTCGAGGAGGAGCATTTCGACGAGTACGAGTACTACAACC
TGACGGACAAATACGTGGAGGGTTCGGCCCGCAAAGGCAGAACCAAGAAGGAGGCCAGCGAGAAC
ACGAACCGGCCCAACCCCGGCGGGCACGAGCGCAAGATCGTGGAGAAACTGCAGAACAGCGAGAA
GAAGGCAAAGGCGTGACCGCTGAGGACTACTCGGACGGATTGAAACGGAAACAGAACATGGGCTT
CTTGGCGACAAAGACGTGCAGGAGTGTTCCAGCGCCGAGGGGCGGAGTTTCGAGAGGGCGTGGCC
ATTCGGCCCAAGAGGAAGCGGGCTCTTTGCACCTGGTTGGTGGTTTGGTCCGGGTTCGGACCGTG
ACTGTGCATCAGTGATGGGTTTTATGTTTTAAAGTCTTTTTCATTTTTTACTATTAAAGGTGTTT
TTTAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAA
/medaka