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About
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- strain
- polymorphism
- chromosome
- locus
- MGI Position(cM)
- Position(bp)
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Map
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Polymorphism
(B6, 129/SVJ)
Chr. No.:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
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NIG Mouse Genome Database
Last Update:
Feb 26, 2018
Version:
2.8.18
Locus table
Locus Name
D17Mit217
Chromosome
17
MGI Position (cM)
38.5
Position (cM)
35.12
Ensembl Chromosome
17
Position (bp)(Length)(Chr.)(
OLD
)
65786953-65787073 (121) (Chr.17), 65786795-65786952 (158) (Chr.17)
Position (
GRCm38
)
Contact person
Yoshiaki KIKKAWA
Sequence
Complete Sequence
Polymorphism table
Polymorphism
B6
>
PGN2
>
CBA
=
129
>
SWR
>
SK/Cam
>
BLG2
>
NJL
>
CAST
>
MSM
>
JF1
>
SWN
>
NC
=
SM
=
DBA
=
A/J
Strains / Fragments (bp)
B6
SM
SWR
129
A/J
CBA
DBA
NC
PGN2
SK/Cam
NJL
BLG2
SWN
MSM
JF1
CAST
119
72
113
115
72
115
72
72
117
111
108
110
94
100
99
106
PCR condition
PCR table
MgCl2 (mM)
1.5
Taq polymerase
AmpliTaq Gold
Thermal cycler
GeneAmp 9700
PCR buffer
AmpliTaq Gold buffer
denature
anneal
extension
cycle
extension step (72 c)
pcr
cycle 1
c
94
55
72
40
min
0.5
0.5
1
cycle 2
c
min
cycle 3
c
min
remarks
Electrophoresis image
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National Institute of Genetics