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BLAST
BLAST with BLASTScope
Output format :
Blastscope (2.2.8)
BLAST default format (2.2.24)
Program
:
blastn (DNA query vs. DNA database)
tblastx (DNA query[translated into protein] vs. DNA database[translated into protein])
tblastn (Protein query vs. DNA database[translated into protein])
Database :
Mouse B6 Genome (DNA) [3699 sequences]
Msm BAC end Sequences (DNA) [352498 sequences]
Msm BAC end Sequences Revised (DNA) [352498 sequences]
cDNA clones:hma:HMI/Ms (DNA) [20870 sequences]
cDNA clones:kja:KJR/Ms (DNA) [19198 sequences]
cDNA clones:msa:MSM/Ms (DNA) [18883 sequences]
cDNA clones:pga:PGN2/Ms (DNA) [19223 sequences]
検索を行う配列データを指定してください。
File Upload
:
or COPY & PASTE
:
必要があれば以下のオプションを設定してください
Options for BLAST Search
Filter
ON
OFF
Expect
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Query Genetic Codes
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Frame shift penalty
for blastx
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Other options:
Options for BLASTScope
Sort Hits order by :
Hit Number
bit score
query from
definition
alignment length
Number of Hits :
All Hits  
Limit :
Hits
Number of HSPs :
All HSPs  
Limit :
HSPs
Limit results by alignment length :
>
Limit results by range of query sequence :
-
Image width :