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Species |
Database |
Institution |
keyword |
| Amphibian | A Xenopus laevis and tropicalis resource http://www.xenbase.org/common/redirectedResource.do |
University of Texas, Austin |  |
| Arabidopsis | ABRChttp://abrc.osu.edu/ |
Ohio State University |   |
| Amphibian | Abteilung Molekulare Embryologiehttp://www.dkfz.de/de/mol_embryology/ |
DFKZ(Deutsches Krebsforschungszentrum) |     |
| Forest Tree Breeding | Arboreahttp://www.arborea.ulaval.ca/en/ |
Université Laval |    |
| Rice | Arizona Genomics Institute (AGI)http://www.genome.arizona.edu/ |
Arizona Genomic Institute & Computational Laboratory |    |
| Arabidopsis, Rice | ASIP Homehttp://www.plantgdb.org/ASIP/ |
University of Minnesota,Department of Genentics, Devlopement and Cell Biology | |
| Rice | ASPGChttp://genome.sinica.edu.tw/ |
Academia Sinica Plant Genome Center (Taiwan) |  |
| Barley | Barley DBhttp://shigen.nig.ac.jp/barley/ |
National Institute of Genetics |  |
| Birds | BBSRC ChickEST Databasehttp://www.chick.manchester.ac.uk/ |
The University of Manchester | |
| Drosophila | Berkeley Drosophila Genome Projecthttp://www.fruitfly.org/ |
Consortium of the Drosophila Genome Center |  |
| Rice | BGI Rise Rice Genome Databasehttp://rice.genomics.org.cn/rice/index2.jsp |
Beijing Genomics Institute (China) | |
| Rice, Plant.Others | Brachypodium.orghttp://www.brachypodium.org/ |
Salk Institute for Biological Studies | |
| Wheat | Cereal Genomics Home Pagehttp://www.cerealsdb.uk.net/cerealgenomics/Index_Home.html |
University of Bristol |  |
| Algae (plants), Algae (Microbe) | Chlamy Connectionhttp://www.chlamy.org/ |
Duke University | |
| Plant.Others | Cucurbit Genomics Databasehttp://www.icugi.org/cgi-bin/ICuGI/index.cgi |
BARD grants and the International Cucurbit Genomics Initiative (ICuGI) |   |
| Plant.Others | CUGIhttp://www.genome.clemson.edu/ |
Clemson University Genomics Institute |  |
| Microbe.Others | DGC Collaboration Wikihttps://wiki.cgb.indiana.edu/display/DGC/Home |
Indiana University | |
| Dictyostelium | dictyBasehttp://dictybase.org/ |
Northwestern University | |
| Others | DNA Bookhttp://134.160.84.27/DNA-Book/ |
RIKEN,Japan & JST |  |
| Mouse | EGTC（Database for the Exchangeable Gene Trap Clones） http://egtc.jp/action/main/index |
Institute of Resource Development and Analysis, Kumamoto University | |
| Medakafish | Ensembl Medakahttp://asia.ensembl.org/Oryzias_latipes/Info/Index?redirect=no |
EBI and WTSI | |
| Pufferfish | Fugu Genome Projecthttp://www.fugu-sg.org/ |
Fugu Genomics Project | |
| Birds | Gallus Expression in Situ Hybridization Analysishttp://geisha.arizona.edu/geisha/index.jsp |
The University of ARIZONA |     |
| Tunicata/Chordata | Ghost Database:Ciona intestinalis genomic and cDNA resourceshttp://ghost.zool.kyoto-u.ac.jp/cgi-bin/gb2/gbrowse/kh/ |
Kyoto University | |
| Wheat | GrainGenes wEST-SQL Databasehttp://wheat.pw.usda.gov/wEST/ |
US Department of Agriculture. (USDA) | |
| Citrus | International Citrus Genome Consortiumhttp://www.citrusgenome.ucr.edu/ |
International Citrus Genome Consortium (ICGC) | |
| Barley, Rice, Wheat, Plant.Others | International Triticeae EST Cooperative (ITEC)http://avena.pw.usda.gov/genome/ |
ARS, USDA | |
| Tomato | Kazusa Full-length Tomato cDNA Databasehttp://www.pgb.kazusa.or.jp/kaftom/ |
Kazusa DNA Research Institute | |
| Rice | Knowledge-based Oryza Molecular biological Encyclopedia (KOME)http://cdna01.dna.affrc.go.jp/cDNA/ |
National Institute of Agrobiological Sciences | |
| Medakafish | M-Base(Medaka Genome Database)http://mbase.nig.ac.jp/mbase/medaka_top.html |
University of Tokyo | |
| Rice | MAFF_Rice cDNA Clone Overviewhttp://bank.dna.affrc.go.jp/~qxrice/hiho/ |
MAFF | |
| Plant.Others | Maize Genetics and Genomics Databasehttp://www.maizegdb.org/ |
USDA Agricultural Reserach Service |  |
| Medakafish | MEPD: Medaka Expression Pattern Databasehttp://mepd.cos.uni-heidelberg.de/mepd/ |
Medaka Genome Initiative | |
| Tomato | MiBASE Micro-Tom Database http://www.kazusa.or.jp/jsol/microtom/ |
Kazusa DNA Research Institute | |
| Mouse | NIA Mouse cDNA Projecthttp://lgsun.grc.nia.nih.gov/cDNA/cDNA.html |
NIH | |
| Others | NRIB：Comprehensive Aspergillus oryzae Genome Database http://nribf21.nrib.go.jp/CFGD/ |
National Research Institute of Brewing | |
| Rice | Oryzabasehttp://shigen.nig.ac.jp/rice/oryzabase/ |
National Institute of Genetics (Japan) |  |
| Rice | PLACE(A Database of Plant Cis-acting Regulatory DNA Elements)http://www.dna.affrc.go.jp/PLACE/ |
National Institute of Agrobiological Sciences | |
| Rice | Plant Genome Initiative at Rutgers (PGIR) http://pgir.rutgers.edu/ |
Rutgers, The State University f New Jersey | |
| Mouse | Projects - Site du Genoscopehttp://www.genoscope.cns.fr/spip/Projects.html |
Genoscope-EEC Mouse Transcript Consortium | |
| Primate | QFbase - Macaca fascicularis cDNA databasehttp://genebank.nibio.go.jp/qfbase/index.html |
National Institute of Biomedical Innovation | |
| Rice | RAP-DBhttp://rapdb.dna.affrc.go.jp/ |
DDBJ (Center for Information Biology and DNA Data Bank of Japan),NIAS (National Institute of Agrobiological Sciences),AIST (National Institute of Advanced Industrial Science and Technology),JBiC (Japan Biological Informatics Consortium),NIG (National Institute of Genetics, Japan) | |
| Human | Reactome Pathway Databasehttp://www.reactome.org/ |
Cold Spring Harbor Laboratory and European Bioinformatics Institute. |  |
| Arabidopsis | Reactome Pathway Databasehttp://www.reactome.org/ |
Cold Spring Harbor Laboratory and European Bioinformatics Institute. | |
| Mouse | Reactome Pathway Databasehttp://www.reactome.org/ |
Cold Spring Harbor Laboratory and European Bioinformatics Institute. | |
| Drosophila | Reactome Pathway Databasehttp://www.reactome.org/ |
Cold Spring Harbor Laboratory and European Bioinformatics Institute. | |
| Arabidopsis | RIKEN Arabidopsis Genome Encyclopediahttp://rarge.psc.riken.jp/ |
RIKEN Genomic Sciences Center | |
| Silkworm | SilkBasehttp://silkbase.ab.a.u-tokyo.ac.jp/cgi-bin/index.cgi |
The University of Tokyo | |
| Silkworm | Silkworm Genome Database http://papilio.ab.a.u-tokyo.ac.jp/genome/ |
The University of Tokyo | |
| Plant.Others, Tomato | Sol Genomics Networkhttp://www.sgn.cornell.edu/ |
Cornell University | |
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